lh3/fermikit

Error in make

Addicted-to-coding opened this issue · 1 comments

When I run the command make -f prefix.mak, I get the error
fermi.kit/bfc -1s 3g -k 61 -t 16 prefix.ec.fq.gz 2> prefix.flt.fq.gz.log | gzip -1 > prefix.flt.fq.gz
/bin/bash: line 1: 13973 Segmentation fault fermi.kit/bfc -1s 3g -k 61 -t 16 prefix.ec.fq.gz 2> prefix.flt.fq.gz.log
13974 Done | gzip -1 > prefix.flt.fq.gz
make: *** [prefix.flt.fq.gz] Error 139
How can I solve this?

perhaps this is too late to help you...
try running with make -d option to get the full verbose details.
also did you get a segmentation fault and did you compile from the source or install from a binary - i wd recommend the former.

I am getting a Error 137 - which is out of memory during the error correction, bfc run. any tips from to optimize wd be appreciated...