Run "python preprocessing_distributions.py --infile restraints.csv" but get an error

[chenx469]

Hi,

When I tried to get distance distributions from restraint lists by running "python preprocessing_distributions.py --infile restraints.csv", I received an error like below

$ python preprocessing_distributions.py --infile restraints.csv
Traceback (most recent call last):
File "/lscratch/14291792/preprocessing_distributions.py", line 50, in
for line in restraints:
TypeError: iteration over a 0-d array

The restraints.csv is a test file and only has one line
12,135,15.0,5.0,normal

Could you let me know how to solve this problem?

Really appreciate!

Xiang

[lhatsk]

Thanks for reporting this! Should be fixed now.

[chenx469]

Thank you very much. It works now.

[varvara-123]

I am falling into a different issue now. I am running preprocessing_distributions.py on a test file containing two lines:
12,135,15.0,5.0,normal
13,136,14.0,5.0,normal

I am seeing the following error after running the script:

$ python preprocessing_distributions.py --infile restraints.csv
Traceback (most recent call last):
File "/../preprocessing_distributions.py", line 54, in
if line["type"] == "normal":
ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()

Could you please help me with this problem?

Thank you,
Varvara

[lhatsk]

Sorry! Also fixed now...