linces/github-slideshow

Issue compiling SU2 using ninja

Ihavenoidea5 opened this issue · 0 comments

So I've been attempting to compile SU2 onto my system but have been receiving the following errors after entering ./ninja -C build install...

ninja: Entering directory build'
[28/742] Linking target externals/cgns/hdf5/H5detect
FAILED: externals/cgns/hdf5/H5detect
mpiCC -o externals/cgns/hdf5/H5detect externals/cgns/hdf5/H5detect.p/H5detect.c.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,--start-group /usr/lib64/libz.so -lm -ldl -Wl,-rpath -Wl,/apps/spack/halstead/apps/hwloc/1.11.11-gcc-8.3.0-4rzoia4/lib -Wl,/usr/lib64 -Wl,/apps/spack/halstead/apps/openmpi/3.1.4-gcc-8.3.0-yp6xjhj/lib -Wl,--enable-new-dtags /apps/spack/halstead/apps/openmpi/3.1.4-gcc-8.3.0-yp6xjhj/lib/libmpi.so -Wl,-rpath -Wl,/apps/spack/halstead/apps/hwloc/1.11.11-gcc-8.3.0-4rzoia4/lib -Wl,/usr/lib64 -Wl,/apps/spack/halstead/apps/openmpi/3.1.4-gcc-8.3.0-yp6xjhj/lib -Wl,--enable-new-dtags /apps/spack/halstead/apps/openmpi/3.1.4-gcc-8.3.0-yp6xjhj/lib/libmpi_cxx.so -Wl,--end-group
/usr/lib64: file not recognized: Is a directory
/usr/bin/sha1sum: externals/cgns/hdf5/H5detect: No such file or directory
collect2: error: ld returned 1 exit status
[30/742] Linking target externals/cgns/hdf5/H5make_libsettings
FAILED: externals/cgns/hdf5/H5make_libsettings
mpiCC -o externals/cgns/hdf5/H5make_libsettings externals/cgns/hdf5/H5make_libsettings.p/H5make_libsettings.c.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,--start-group /usr/lib64/libz.so -lm -ldl -Wl,-rpath -Wl,/apps/spack/halstead/apps/hwloc/1.11.11-gcc-8.3.0-4rzoia4/lib -Wl,/usr/lib64 -Wl,/apps/spack/halstead/apps/openmpi/3.1.4-gcc-8.3.0-yp6xjhj/lib -Wl,--enable-new-dtags /apps/spack/halstead/apps/openmpi/3.1.4-gcc-8.3.0-yp6xjhj/lib/libmpi.so -Wl,-rpath -Wl,/apps/spack/halstead/apps/hwloc/1.11.11-gcc-8.3.0-4rzoia4/lib -Wl,/usr/lib64 -Wl,/apps/spack/halstead/apps/openmpi/3.1.4-gcc-8.3.0-yp6xjhj/lib -Wl,--enable-new-dtags /apps/spack/halstead/apps/openmpi/3.1.4-gcc-8.3.0-yp6xjhj/lib/libmpi_cxx.so -Wl,--end-group
/usr/lib64: file not recognized: Is a directory
/usr/bin/sha1sum: externals/cgns/hdf5/H5make_libsettings: No such file or directory
collect2: error: ld returned 1 exit status
[49/742] Compiling C object externals/cgns/hdf5/libsu2hdf5.a.p/H5Fint.c.o
ninja: build stopped: subcommand failed.`

I'm new to linux so I have no idea what this could mean