linnarsson-lab/BackSPIN

Output to file instead of folder

slinnarsson opened this issue · 6 comments

slinnarsson commented

Since the output is a single CEF file, it would be better to just write that file directly (and not put it inside a run folder).

gioelelm commented

Ok so we provide just this output for now?

slinnarsson commented

What else did you have in mind?

gioelelm commented

plots, correlation matrix, other formats? ...maybe is unnecessary though.
Ok I will make the change. How do I update it on github?

slinnarsson commented

You need git. See http://rogerdudler.github.io/git-guide/

Then:

git clone https://github.com/linnarsson-lab/BackSPIN

Make changes locally on your laptop

git add
git commit -m "Made some changes"
git push

slinnarsson commented

Might be a good idea to make a separate tool for visualizing a CEF file. Correlation matrix, barplots, histograms - then it could be used on any CEF i.e. one clustered by other methods.

gioelelm commented

Sure, with matplotlib is quite straightforward. Even interactive heat map like the one I am used to work with could be useful.