Deep Learning Tutorial for Pulmonary Nodules AI Diagnosis, using Keras and Caffe

天池医疗AI大赛[第一季]：肺部结节智能诊断

@author Jeniffer Wu

U-Net训练基于卷积神经网络的肺结节分割器

Build-test-dataset folder

This code is to deal with Tianchi Dataset, and train lung nodule segmentation based on convolutional neural network using U-Net deep learning framework.

Caffe训练基于卷积神经网络的的图像分类算法(如 CNN 等)对疑似结节进行分类,得出疑似肺结节是否为真正肺结节的概率

caffe_CNN_training folder

This code is to deal with Tianchi Dataset, and train the algorithm for image classification (such as CNN) to classify the suspected nodules, the suspected pulmonary nodule isWhether the real probability of pulmonary nodules.

DSB3Tutorial

mask_segment folder

This code is the companion for the tutorial located at https://www.kaggle.com/c/data-science-bowl-2017#tutorial

About this repository

This repository is not intended to be an out of the box solution for the DSB challenge. It will not run out-of-the-box without editing. That was not it's intention. The tutorial was put together rapidly by several people working in tandem and the code herein is a collection of the code they used to produce the tutorial found on the DSB website.

The intent behind this tutorial was to presented a series of steps that can be followed as a starting point for competitors. Our hope is that this can save competitors time in framing the problem and that they can lift some of this code to speed up their own solution generation. We expect that the competitors efforst will supercede this tutorial in short order--which is, of course, the point of the competition.

Thanks for participating and helping to advance cancer diagnosis!

slices图像将进一步的放入深度学习模型,进行肺部结节的进一步检测 (Pre-processed Images with region of interest in lung)。

evaluation script

mask_segment/evaluationScript folder

Additional data

Optional data could be downloaded from the following links.

evaluation script: the LUNA16 evaluation script can be found here. The script could be used to locally evaluate the system for development purposes. More info is available here. [updated: 17th June 2016]

lung segmentation: a drive folder containing the lung segmentation can be found here. [updated: 28th April 2016]

additional_annotations.csv: the file will be available soon.

TianChiMedical_AI 天池医疗AI挑战赛

preprocessing folder

这个工程用于托管我分享帖中涉及的代码，有部分病人的文件作为示例。

0. 文件说明

csv_files

存放了那几个csv文件

nodule_cubes

npy里存放的是提取出来的nodule_cubes

slices_masks

存放的是根据annotations.csv文件生成的slices和对应的GroundTruth，可用于训练2D-Unet

liuyonglog/pulmonary_nodules_AI_diagnosis