Pinned Repositories
HGSC_SpatialPerturbational
Repository for reproducing figures and tables for the study titled, "Mapping spatial organization and genetic cell state regulators to target immune evasion in ovarian cancer"
DIALOGUE
bms038_analysis
Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization
carldeboer.github.io
DIALOGUE
DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.
GMDF
ImmuneResistance
This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".
inferCNV
Inferring CNV from Single-Cell RNA-Seq
kjh-vita
A simple LaTeX template that I use for my Vita.
ulcerative_colitis
livnatje's Repositories
livnatje/DIALOGUE
DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.
livnatje/ImmuneResistance
This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".
livnatje/GMDF
livnatje/bms038_analysis
Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization
livnatje/inferCNV
Inferring CNV from Single-Cell RNA-Seq
livnatje/carldeboer.github.io
livnatje/kjh-vita
A simple LaTeX template that I use for my Vita.
livnatje/ulcerative_colitis