pymmdb is a python package that provides the interface to access the datasets in scMMDB.
$ pip install pymmdb
# 1.Clone the source code from github
$ git clone https://github.com/ljw-struggle/pymmdb.git
$ cd pymmdb
# 2. Create a conda environment and activate it.
$ conda env create -n pymmdb --file env.yml
$ conda activate pymmdb
# 3. Install pymmdb as a dependency or third-party package with pip.
$ python setup.py install # or python setup.py develop or pip install -e .
import pymmdb
mmdb = pymmdb.MMDB() # Create a MMDB object
dataset = mmdb.load_dataset('Dataset_A_000') # Load a specific dataset
Please refer to šDocumentation and Tutorials for more details.
Jiawei Li, Mengyuan Zhao, Jiahui Yan, Yanlin Jiang, Zongbo Han, Shizhan Chen, Wei Li, Limin Jiang, Louxin Zhang, Fang Wang, Jijun Tang, Fei Guo. scMMDB: a comprehensive resource and knowledgebase for multimodal omics data at the single-cell resolution, 2024