Problems with installing HDCytoData Package on Windows
Opened this issue · 1 comments
Hello,
I am trying to install the HDCytoData Package in Rstudio and am encountering issues. Below is the command and error message I receive:
BiocManager::install("HDCytoData")
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: https://cran.rstudio.com/
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21 ucrt)
Installing package(s) 'HDCytoData'
installing the source package ‘HDCytoData’
trying URL 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/HDCytoData_1.20.0.tar.gz'
Content type 'application/x-gzip' length 1544165 bytes (1.5 MB)
downloaded 1.5 MB
& was unexpected at this time.
The downloaded source packages are in
‘C:\Users\roger\AppData\Local\Temp\Rtmp8mm0LN\downloaded_packages’
Installation paths not writeable, unable to update packages
path: C:/Program Files/R/R-4.3.0/library
packages:
class, KernSmooth, nnet
Old packages: 'later', 'viridis', 'viridisLite'
Update all/some/none? [a/s/n]:
n
Warning message:
In install.packages(...) :
installation of package ‘HDCytoData’ had non-zero exit status
Below is my session info:
sessionInfo()
R version 4.3.0 (2023-04-21 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
time zone: America/Los_Angeles
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] BiocManager_1.30.20 compiler_4.3.0 tools_4.3.0
I have installed other packages with no issues, and this seems to be a Windows-specific problem. Could someone please advise? Thank you!
Apologies for the slow response. Was this issue resolved?
It looks like the issue was that the directory C:\Users\roger\AppData\Local\Temp\Rtmp8mm0LN\downloaded_packages on your local system (where the Bioconductor installer was downloading the package) was not writeable, so maybe deleting this directory and trying again would help.