lucacozzuto
NGS data analysis Coordinator @ Bioinformatics Core Facility @CRG-CNAG
Centre for Genomic RegulationBarcelona
Pinned Repositories
BioNextflow
A collection of modules and sub-workflows for Nextflow
ExOrthist
ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
indrop
Single cell transcriptome analysis pipeline based on DropEst
master_of_pores
Nextflow pipeline for analysis of direct RNA Nanopore reads
MOP2
Master of Pores 2
BioNextflow
Nextflow functions for biological tools
covid_CFR_estimator
Some useful stuff about covid19 pandemics
test_course
just a test
lucacozzuto's Repositories
lucacozzuto/test_course
just a test
lucacozzuto/BioNextflow
Nextflow functions for biological tools
lucacozzuto/ASElux
lucacozzuto/CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
lucacozzuto/chipseq
Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.
lucacozzuto/course_2021
my pipeline
lucacozzuto/covid_plots
Scripts for making plots
lucacozzuto/covid_stuff
some script for making plots
lucacozzuto/CRG_RIntroduction
lucacozzuto/deeplexicon
Signal based nanopore RNA demultiplexing with convolutional neural networks
lucacozzuto/DEQ
An R package to conveniently run DESeq2, edgeR, and QNB for the detection of differential methylation in MeRIP/m6A-seq data.
lucacozzuto/docker-centos-perlbrew
Basic Docker image for running CentOS with perlbrew installed
lucacozzuto/dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
lucacozzuto/FlowBio
A fast, easy way to present complex bioinformatics pipelines to biologists
lucacozzuto/indrops
Pipeline for processing inDrops sequencing data
lucacozzuto/millidocs
A simple documentation theme for Jekyll.
lucacozzuto/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
lucacozzuto/nextflow
Translating Nextflow in PhP
lucacozzuto/nextflow_pytorch_gpu
lucacozzuto/NF_test_case
nextflow test pipeline
lucacozzuto/redgrease
Grease for your Redis Gears
lucacozzuto/riboflow
Pipeline for Ribosome Profiling Data
lucacozzuto/Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome sequencing data
lucacozzuto/sphinx-pages
Build html documentation by Sphinx, and push to branch gh-pages.
lucacozzuto/SUPPA
SUPPA2: Fast quantification of differential splicing
lucacozzuto/terraform-provider-snowflake
lucacozzuto/ThermoRawFileParser
Thermo RAW file parser that runs on Linux with mono
lucacozzuto/tombo
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
lucacozzuto/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
lucacozzuto/tutorial-template
Template for the Read the Docs tutorial