lukaszsobala's Stars
glycoinfo/GlycanBuilder2
KatyBrown/CIAlign
sherrillmix/taxonomizr
Parse NCBI taxonomy and accessions to find taxonomic assignments
acorg/figtree-recolor
A script to re-color a FigTree saved Nexus file
V-Z/course-r-mol-data
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
rcedgar/muscle
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
sabifo4/mammals_dating
Methods for the analyses described in Álvarez-Carretero et al. 2022 (https://doi.org/10.1038/s41586-021-04341-1)
arklumpus/TreeViewer
Cross-platform software to draw phylogenetic trees
sokrypton/ColabFold
Making Protein folding accessible to all!
soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
yinlabniu/run_dbcan
Run_dbcan V3, using genomes/metagenomes/proteomes of any orgaisms(prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
google-deepmind/alphafold
Open source code for AlphaFold.
TheBrownLab/PhyloFisher
PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
glycojones/privateer
The Swiss Army knife for carbohydrate structure validation, refinement and analysis
NBISweden/development-guidelines
Development guidlines for software within NBIS.
BenoitMorel/GeneRax
seqan/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
genomeannotation/transvestigator
Validates transcriptome and prepares it for submission to the NCBI
steineggerlab/conterminator
Detection of incorrectly labeled sequences across kingdoms
sylvainforet/psytrans
Parasite Symbiont Transcriptome Separation
JLSteenwyk/orthofisher
a broadly applicable tool for automated gene identification and retrieval
abraunegg/onedrive
OneDrive Client for Linux
dlavrov/bio-geneorder
BioPerl module for gene order data
laelbarlow/amoebae
Workflow for identifying and classifying homologous gene/protein sequences
guyleonard/get_ensembl_genomes
A quick and easy way to download the genomes/predicted proteins of taxa available from ENSEMBL Genomes
Edward1292/SI_PALLISTER_GLYCAN_LIBRARY_A_STAR_BTI_UOM