m-a-martin

Pinned Repositories

within-host-diversity
Language:Python5 3 00
SARS-CoV-2-in-Southern-Wisconsin
Language:Jupyter Notebook1 1 11
sarscov2_nb_reanalysis
Reanalysis of the SARS CoV-2 bottleneck estimates presented in Popa & Genger et al. Science Translational Medicine 2020
Language:Shell1 1 00
segregating-sites
Code for epidemiological inference using segregating site trajectories
Language:Python31
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
Language:Python00
influenza_dvg
Analysis of influenza deep sequence data to identify defective viral genomes
Language:Python00
rccs_hiv_resistance_r15_r19
Language:R00
within-host-diversity
Language:Python1 0 00
Mascot
BEAST2 implementation of the Masco approximation of the structured coalescent with forwards/backwards algorithm for node state calculation
Language:Java9 7 85
SARSCOV2NGS
SARS-CoV-2 NGS and phylodynamic inference
Language:Python33

m-a-martin's Repositories

m-a-martin/within-host-diversity
Language:Python1 0 00
m-a-martin/artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
Language:Python00
m-a-martin/influenza_dvg
Analysis of influenza deep sequence data to identify defective viral genomes
Language:Python00
m-a-martin/rccs_hiv_resistance_r15_r19
Language:R00