macarthur-lab/tx_annotation

NameError: name 'vep_config_path' is not defined

Opened this issue · 0 comments

When I try to run

from tx_annotation import *
Traceback (most recent call last):
File "", line 1, in
File "/home/xiaohui/miniconda3/envs/hail/tx_annotation/init.py", line 2, in
from tx_annotation.tx_annotation_resources import *
File "/home/xiaohui/miniconda3/envs/hail/tx_annotation/tx_annotation_resources.py", line 41, in
vep_config = vep_config_path("GRCh37")
NameError: name 'vep_config_path' is not defined

Can anyone tell me what vep config is ??

I try to find the vep config suggested in the README.md file the "vep config" doesn't exist anymore
gsutil ls gs://hail-common/vep/vep/
CommandException: One or more URLs matched no objects.
gsutil ls gs://hail-common/vep/
CommandException: One or more URLs matched no objects.

Could anyone help me? Thanks!