Error when installing meld-openmm-plugin

[wtren]

I met some problems when installing meld-openmm-plugin, the error messages are:

In file included from /home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:6:
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:9:26: error: openmm/Force.h: No such file or directory
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:10:25: error: openmm/Vec3.h: No such file or directory
In file included from /home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:7:
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/internal/MeldForceImpl.h:10:39: error: openmm/internal/ForceImpl.h: No such file or directory
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/internal/MeldForceImpl.h:11:27: error: openmm/Kernel.h: No such file or directory
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:9:36: error: openmm/OpenMMException.h: No such file or directory
In file included from /home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:6:
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: 'OpenMM' has not been declared
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: expected {' before 'Force' /home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: function definition does not declare parameters In file included from /home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:7: /home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/internal/MeldForceImpl.h:19: error: 'OpenMM' has not been declared /home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/internal/MeldForceImpl.h:19: error: expected {' before 'ForceImpl'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/internal/MeldForceImpl.h:19: error: function definition does not declare parameters
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:13: error: 'OpenMM' is not a namespace-name
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:13: error: expected namespace-name before ';' token
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:16: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:19: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:19: error: 'Context' was not declared in this scope
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:19: error: 'context' was not declared in this scope
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:23: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:27: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:31: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:35: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:39: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:48: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:52: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:62: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:68: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:73: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:79: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:87: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:94: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:102: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:109: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:117: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:125: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:134: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:147: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:162: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:171: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:180: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:189: error: expected constructor, destructor, or type conversion before '*' token
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:195: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:208: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:223: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:238: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:262: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:295: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/src/MeldForce.cpp:302: error: invalid use of incomplete type 'class MeldPlugin::MeldForce'
/home-gk/users/nscc1464/wtren/softs/meld-openmm-plugin-master/openmmapi/include/MeldForce.h:21: error: forward declaration of 'class MeldPlugin::MeldForce'
make[2]: *** [CMakeFiles/MeldPlugin.dir/openmmapi/src/MeldForce.cpp.o] Error 1
make[1]: *** [CMakeFiles/MeldPlugin.dir/all] Error 2
make: *** [all] Error 2

It seems that some header files cannot be found. So how can I fix these problems?
PS: I installed openmm7.0 by the pre-compiled binary of OpenMM for Linux

[jlmaccal]

@wtren This repository is actually deprecated. The plugin has been rolled into the latest version of MELD at github.com/maccallumlab/meld.

The easiest way to install is to use anaconda:

conda create -c omnia -c maccallum_lab -n meld meld-cudaXX

Where XX is either 75 or 80 for cuda-7.5 or cuda-8.0.

I will mark this repository as deprecated.

[wtren]

Hi Justin: Thank you for reminding me of that. I have installed latest version meld on the basis of cuda-6.5 from the source code. Do I need to install higher version of cuda and rebuilt the meld? Weitong* Ren, PhD student* Laboratory of Biophysics Department of Physics *Nanjing University* Nanjing, Jiangsu, PR China 210093 tel : +86 025 8359 7226 *wtren@biophy.nju.edu.cn <wtren@biophy.nju.edu.cn>*

…

On Tue, Mar 7, 2017 at 5:33 AM, Justin MacCallum ***@***.***> wrote: @wtren <https://github.com/wtren> This repository is actually deprecated. The plugin has been rolled into the latest version of MELD at github.com/maccallumlab/meld. The easiest way to install is to use anaconda: conda create -c omnia -c maccallum_lab -n meld meld-cudaXX Where XX is either 75 or 80 for cuda-7.5 or cuda-8.0. I will mark this repository as deprecated. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#11 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ADpUMyPzUdcrGMoyRBRpVVp6j96bLP_Bks5rjHu2gaJpZM4MTZNV> .