This repo contains a simple pipeline as an example of my approach to bioinformatics
- nextflow version 23.10.1 (https://www.nextflow.io/docs/latest/getstarted.html)
- sdkman installation
- Java Corretto 17 (sdk install java 17.0.6-amzn)
- Docker:
- the "simple_biofx_docker" is used when running the pipeline
- run the following command
- docker build . -t "simple_biofx_docker"
- the "simple_biofx_docker" is used when running the pipeline
Execute the pipeline using nextflow
E.g., nextflow run main.nf -profile local