The meaning of CNV types ?

Question

The meaning of CNV types ?

Bobo22331 opened this issue 5 years ago · 2 comments

Hi,

Thank you for your SVMU tools. When checking the svmu results of sv.txt, I can't understand the meaning of CNV types, such as CNV-Q, CNV-R, nCNV-Q and nCNV-R.

Can you explain the detail meaning of these CNV types?

Thank you in advance!

Answer 1 · 2020-08-08T04:59:04.000Z

Hi,
CNV-Q = more copies in the query genome (query is in the mummer terminology)
CNV-R = more copies in reference
nCNV-Q = >2 copies in query
nCNV-R = >2 copies in reference

Answer 2 · 2020-08-08T05:27:42.000Z

OK. Thank you. From Chipcui’s iPhone SE

…

在 2020年8月8日，下午12:59，Mahul Chakraborty ***@***.***> 写道： Hi, CNV-Q = more copies in the query genome (query is in the mummer terminology) CNV-R = more copies in reference nCNV-Q = >2 copies in query nCNV-R = >2 copies in reference — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.