All vs All interactive plot

[Adamtaranto]

Is it possible to generate an All vs All dotplot with ModDotPlot?

When I run moddotplot -i Asm_A.fasta Asm_B.fasta --compare I'm just getting a single dotplot of contig_1 vs contig_2 from the first fasta file only.

[alexsweeten]

Hi Adam,

ModDotPlot's interactive mode only supports a maximum of two sequences at a time. By default it will select the first two.

Running moddotplot with --static will compare all combinations of input sequences.

Best,
Alex

[Adamtaranto]

Hi Alex, thanks for clarifying. Would love to see All vs All as a feature in a future version :)

[amakunin]

Hi @alexsweeten - as an option, would you consider generating Cooler files for interactive visualisation in HiGlass?