martinjzhang/scDRS

Issues

• Sig. cell type-disease associations and Sig. individual cells

  #104 opened 2 months ago by hopehan12
  3

• Convert Seurat object to h5ad file

  #59 opened 2 years ago by uqzqiao
  19

• Issue with plot using scdrs.util.plot_group_stats

  #97 opened 2 months ago by NaomiHuntley
  2

• Why are some of the CORR columns in the <trait>.scdrs_gene file negative, and the largest RANK level is the smallest negative number, can this represent the gene most associated with disease and cell type?

  #102 opened 3 months ago by MoWeiLanChen
  1

• About the H5AD input - raw counts or normalized+transformed?

  #103 opened 3 months ago by hopehan12
  2

• use scdrs in a tissue seemlingly unrelated with the disease

  #92 opened 5 months ago by Davidseye
  7

• scdrs perform-downstream: fail to load scDRS full score gz file

  #101 opened 3 months ago by hopehan12
  2

• Questions about reproducing results

  #100 opened 3 months ago by HelloWorldLTY
  10

• The relationship between cell type association and heterogeneity

  #99 opened 3 months ago by AI-10
  0

• Questions about example dataset usage

  #98 opened 3 months ago by HelloWorldLTY
  2

• Correcting cell-level p-values for multiple comparisons?

  #94 opened 4 months ago by schroeme
  3

• Questions about matched gene sets

  #95 opened 4 months ago by HelloWorldLTY
  2

• fail to get the "1000 top associated genes" based on MAGMA

  #93 opened 4 months ago by yihancc
  2

• tcell.facs.annot.h5ad without GENE name

  #91 opened 5 months ago by Davidseye
  2

• Converting GWAS catalog .tsv file to gene set

  #89 opened 5 months ago by kayihui
  3

• TypeError: plot_group_stats() got an unexpected keyword argument 'plot_kws'

  #81 opened 5 months ago by Huiflorazhan
  16

• Using geneset from SMR result

  #87 opened 5 months ago by Misaka-15134
  1

• Preprocessing: killed running scdrs compute-score

  #90 opened 5 months ago by schroeme
  4

• Interpreting scDRS score when comparing cell-type subclusters

  #86 opened 6 months ago by HyeonbinJoHCho
  1

• ValueError: too many values to unpack (expected 2)

  #88 opened 6 months ago by kayihui
  8

• The 'n_fdr_0.2' number of all group is 0

  #84 opened 7 months ago by Y-Isaac
  7

• Gene weights or without gene weights

  #71 opened 7 months ago by QianChwnLyn
  3

• The graphs from a single result and multiple results are inconsistent

  #74 opened 7 months ago by QianChwnLyn
  13

• AssertionError when running quick test after installation

  #83 opened 7 months ago by hoholee
  7

• trait=z_score: skipped due to small size (n_gene=5, sys_time=116.1s)

  #82 opened 8 months ago by Lualululu
  1

• plot_group_stats() got an unexpected keyword argument 'plot_kws'

  #65 opened a year ago by milospjanic
  15

• Is it reasonable to use human' geneset on mouse scRNAseq data?

  #80 opened 10 months ago by zehualilab
  2

• About compute-score

  #79 opened 10 months ago by evenDDDDD
  0

• TypeError: '<' not supported between instances of 'str' and 'float'

  #78 opened a year ago by zehualilab
  3

• Subsetting cells for downstream analysis.

  #77 opened a year ago by jeji0209
  1

• custom gene set ?

  #73 opened a year ago by zhangpicb
  2

• compute-score is not reading .gs file properly

  #72 opened a year ago by juliaapolonio
  2

• Update dependencies of scDRS

  #70 opened a year ago by martinjzhang
  0

• Error in scdrs perform-downstream --group-analysis

  #62 opened a year ago by jiawei-zhong
  4

• Issues Plotting UMAP from quick start tutorial

  #68 opened a year ago by NaomiHuntley
  1

• error metaclass conflict

  #67 opened a year ago by jhong26
  1

• turning off fdr correction

  #66 opened a year ago by milospjanic
  1

• perform-downstream outputs zero significant cells

  #64 opened a year ago by gwentea
  1

• gene weights for the control genes

  #69 opened a year ago by aandreas13
  5

• scRNA data input

  #63 opened 2 years ago by frucelee
  6

• munge-gs input format

  #61 opened 2 years ago by DonaldSandoz2000
  2

• scdrs compute-score output

  #57 opened 2 years ago by NaomiHuntley
  4

• Remove NA values in corr anlaysis

  #60 opened 2 years ago by martinjzhang
  0

• Please help with scDRS for the plant Arabidopsis thaliana

  #56 opened 2 years ago by bitcometz
  15

• "skipped due to small size" error

  #54 opened 2 years ago by NaomiHuntley
  9

• Error when adata.obs_names can be interpreted as integers

  #52 opened 2 years ago by daxxio
  2

• Adjusting for donor effects

  #48 opened 2 years ago by Ararder
  1

• GWAS traits and a control traits

  #49 opened 2 years ago by Li-mengjie
  12

• tutorial-Quick start ——full_score.gz

  #50 opened 2 years ago by zhouxilala
  1

• Considerations for single cell splicing data

  #51 opened 2 years ago by dbogdano
  2