martinjzhang/scDRS

scdrs perform-downstream: fail to load scDRS full score gz file

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hopehan12 commented

Hi,

I am trying to run scdrs perform-downstream, but it keeps showing the error that cannot find the full score directory. Could you help me with this?

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scdrs perform-downstream --h5ad-file seurat3.h5ad --score-file outfolder23Aug/HTN.full_score.gz --out-folder outfolder26Aug --group-analysis Celltype

NotADirectoryError: [WinError 267] The directory name is invalid: 'outfolder23Aug/HTN.full_score.gz'

Many thanks!

martinjzhang commented

Have you tried using the absolute path? Also, consider running scDRS in a Unix system. I think there may be some compatibility issue with the Windows system.

hopehan12 commented

Hi Martin,

Yes, I tried using the absolute path but it didn't work. But it works perfectly fine in a Unix system! Thank you very much!

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