Got ValueError when run run_test.sh

[QingfengWen]

Hi, I got a problem when run run_test.sh, see below.

Starting VCF files analysis...

Step 1: Extract results for mirnaome
Cleaning output folder
checking:
input_files/input_vcf/example_vcf_set/sample01.vcf
checking:
input_files/input_vcf/example_vcf_set/sample03.vcf
checking:
input_files/input_vcf/example_vcf_set/sample02.vcf
1 / 3

input_files/input_vcf/example_vcf_set/sample01.vcf
2 / 3

input_files/input_vcf/example_vcf_set/sample03.vcf
3 / 3

input_files/input_vcf/example_vcf_set/sample02.vcf
Step 2 (optional): Merge all algorithms and filter mutations
Step 3: Add miRNA information
Step 4: Add mutation weights and HGVS nomenclature
Step 5: Make complex, distinct and occure files
Step 6: All mutations visualizations
Traceback (most recent call last):
File "/Users/wenqingfeng/Desktop/multi_omics_AD/CSV/mirnome-mutations/run_mirnaome_analysis.py", line 104, in
main()
File "/Users/wenqingfeng/miniconda3/lib/python3.10/site-packages/click/core.py", line 1130, in call
return self.main(*args, **kwargs)
File "/Users/wenqingfeng/miniconda3/lib/python3.10/site-packages/click/core.py", line 1055, in main
rv = self.invoke(ctx)
File "/Users/wenqingfeng/miniconda3/lib/python3.10/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/Users/wenqingfeng/miniconda3/lib/python3.10/site-packages/click/core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "/Users/wenqingfeng/Desktop/multi_omics_AD/CSV/mirnome-mutations/run_mirnaome_analysis.py", line 95, in main
prepare_figure(output_folder)
File "/Users/wenqingfeng/Desktop/multi_omics_AD/CSV/mirnome-mutations/mutation_loc_figures.py", line 445, in prepare_figure
create_plot(df_temp, output_folder + '/plots/plot_miRNA.svg',
File "/Users/wenqingfeng/Desktop/multi_omics_AD/CSV/mirnome-mutations/mutation_loc_figures.py", line 144, in create_plot
plt.grid(b=True, which='major', axis='y', color='lightgrey',
File "/Users/wenqingfeng/miniconda3/lib/python3.10/site-packages/matplotlib/pyplot.py", line 2616, in grid
return gca().grid(visible=visible, which=which, axis=axis, **kwargs)
File "/Users/wenqingfeng/miniconda3/lib/python3.10/site-packages/matplotlib/axes/_base.py", line 3196, in grid
self.yaxis.grid(visible, which=which, **kwargs)
File "/Users/wenqingfeng/miniconda3/lib/python3.10/site-packages/matplotlib/axis.py", line 1660, in grid
self.set_tick_params(which='major', **gridkw)
File "/Users/wenqingfeng/miniconda3/lib/python3.10/site-packages/matplotlib/axis.py", line 932, in set_tick_params
kwtrans = self._translate_tick_params(kwargs)
File "/Users/wenqingfeng/miniconda3/lib/python3.10/site-packages/matplotlib/axis.py", line 1076, in _translate_tick_params
raise ValueError(
ValueError: keyword grid_b is not recognized; valid keywords are ['size', 'width', 'color', 'tickdir', 'pad', 'labelsize', 'labelcolor', 'zorder', 'gridOn', 'tick1On', 'tick2On', 'label1On', 'label2On', 'length', 'direction', 'left', 'bottom', 'right', 'top', 'labelleft', 'labelbottom', 'labelright', 'labeltop', 'labelrotation', 'grid_agg_filter', 'grid_alpha', 'grid_animated', 'grid_antialiased', 'grid_clip_box', 'grid_clip_on', 'grid_clip_path', 'grid_color', 'grid_dash_capstyle', 'grid_dash_joinstyle', 'grid_dashes', 'grid_data', 'grid_drawstyle', 'grid_figure', 'grid_fillstyle', 'grid_gapcolor', 'grid_gid', 'grid_in_layout', 'grid_label', 'grid_linestyle', 'grid_linewidth', 'grid_marker', 'grid_markeredgecolor', 'grid_markeredgewidth', 'grid_markerfacecolor', 'grid_markerfacecoloralt', 'grid_markersize', 'grid_markevery', 'grid_mouseover', 'grid_path_effects', 'grid_picker', 'grid_pickradius', 'grid_rasterized', 'grid_sketch_params', 'grid_snap', 'grid_solid_capstyle', 'grid_solid_joinstyle', 'grid_transform', 'grid_url', 'grid_visible', 'grid_xdata', 'grid_ydata', 'grid_zorder', 'grid_aa', 'grid_c', 'grid_ds', 'grid_ls', 'grid_lw', 'grid_mec', 'grid_mew', 'grid_mfc', 'grid_mfcalt', 'grid_ms']

I've got all packages installed successfully, just wonder how I can solve this? Many thanks!

Best,
Wen