Pinned Repositories
ATACseq_Gelang_Fernandez_Abassah
ChIPseq_Akerberg-Tbx5_Gao-Isl1__IrosPipeline
ChIPseq_Wamstad-ESC-MES-CP-CM__IrosPipeline
DataSets-for-GSE232883
A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival [ChIP-seq]
Embryonal_Histonemarks_CTCF_Peaks
FULL.SPECS_ACS
Barbara Wold Lab Caltech - polyA plus RNA-seq Assay | Experiment summary for ENCSR6910PQ - www.encodeproject.org/experiments/ENCSR6910PQ | Annotations (mm10 genome) of TFs Motifs activs in Developmental Mouse Heart at E11.5
FULL.SPECS_CLASSES
Barbara Wold Lab Caltech - polyA plus RNA-seq Assay | Experiment summary for ENCSR6910PQ - www.encodeproject.org/experiments/ENCSR6910PQ | Annotations (mm10 genome) of TFs Motifs activs in Developmental Mouse Heart at E11.5
GENE.ID_ACS
Barbara Wold Lab Caltech - polyA plus RNA-seq Assay | Experiment summary for ENCSR6910PQ - www.encodeproject.org/experiments/ENCSR6910PQ | Annotations (mm10 genome) of TFs Motifs activs in Developmental Mouse Heart at E11.5
GENE.ID_CLASSES
Barbara Wold Lab Caltech - polyA plus RNA-seq Assay | Experiment summary for ENCSR6910PQ - www.encodeproject.org/experiments/ENCSR6910PQ | Annotations (mm10 genome) of TFs Motifs activs in Developmental Mouse Heart at E11.5
GENE.ID_FPKM
Barbara Wold Lab Caltech - polyA plus RNA-seq Assay | Experiment summary for ENCSR6910PQ - www.encodeproject.org/experiments/ENCSR6910PQ | Annotations (mm10 genome) of TFs Motifs activs in Developmental Mouse Heart at E11.5
matteozoia4's Repositories
matteozoia4/ATACseq_Gelang_Fernandez_Abassah
matteozoia4/ChIPseq_Akerberg-Tbx5_Gao-Isl1__IrosPipeline
matteozoia4/ChIPseq_Wamstad-ESC-MES-CP-CM__IrosPipeline
matteozoia4/DataSets-for-GSE232883
A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival [ChIP-seq]
matteozoia4/Embryonal_Histonemarks_CTCF_Peaks
matteozoia4/FULL.SPECS_ACS
Barbara Wold Lab Caltech - polyA plus RNA-seq Assay | Experiment summary for ENCSR6910PQ - www.encodeproject.org/experiments/ENCSR6910PQ | Annotations (mm10 genome) of TFs Motifs activs in Developmental Mouse Heart at E11.5
matteozoia4/FULL.SPECS_CLASSES
Barbara Wold Lab Caltech - polyA plus RNA-seq Assay | Experiment summary for ENCSR6910PQ - www.encodeproject.org/experiments/ENCSR6910PQ | Annotations (mm10 genome) of TFs Motifs activs in Developmental Mouse Heart at E11.5
matteozoia4/GENE.ID_ACS
Barbara Wold Lab Caltech - polyA plus RNA-seq Assay | Experiment summary for ENCSR6910PQ - www.encodeproject.org/experiments/ENCSR6910PQ | Annotations (mm10 genome) of TFs Motifs activs in Developmental Mouse Heart at E11.5
matteozoia4/GENE.ID_CLASSES
Barbara Wold Lab Caltech - polyA plus RNA-seq Assay | Experiment summary for ENCSR6910PQ - www.encodeproject.org/experiments/ENCSR6910PQ | Annotations (mm10 genome) of TFs Motifs activs in Developmental Mouse Heart at E11.5
matteozoia4/GENE.ID_FPKM
Barbara Wold Lab Caltech - polyA plus RNA-seq Assay | Experiment summary for ENCSR6910PQ - www.encodeproject.org/experiments/ENCSR6910PQ | Annotations (mm10 genome) of TFs Motifs activs in Developmental Mouse Heart at E11.5
matteozoia4/Multiome10X_ATAC_chromHMM_Analysis
Marco.O_Javier.L.R 2022 Multiome10X_ATAC+chromHMM_Analysis Mus.musculus Heart_tissue Dev.Stages_e9.5_e10.5_e11.5
matteozoia4/Embryonal_Histonemarks_CTCF_Profiles
matteozoia4/GSE215065-2023-Xiaoran-Zhang-Atria-Ventricle-WT-Cardiomyocytes-ChIP-seq
matteozoia4/Heart---ATACseq
matteozoia4/Heart---ChIPseq---CTCF-Histone-marks-
matteozoia4/Heart---ChIPseq---TFs
matteozoia4/hg19_VanOudenhove_CaylinSpurrell
matteozoia4/Multiome_Virginia_-_Eka_Project
Multiome Analysis E9.5 Julie Gamart 2022 / Open Accessible Chromatine Signatures E9.5 / Seurat-Clusters : OFT-cNCC, Endocardial-2, SHF-prog., RV-CMs, EndMT, Epicardial, LV-CMs.
matteozoia4/OSTERWALDER-LAB---ATACseq-ChIPseq---Heart-Tissue
Hand2 ChIPseq Heart E10.5 Laurent 2017 GSM1891954 GSM1891956
matteozoia4/OSTERWALDER-LAB---ATACseq-ChIPseq---Heart-Tissue---Gata4-TNT-TIE2-ko-het
matteozoia4/OSTERWALDER-LAB---Multiome-snATACseq---Heart-Tissue
21 Clusters - Un-grouped stages analysis - MACS3
matteozoia4/OSTERWALDER-LAB---Multiome-snATACseq---Macs3---21Clusters-Developmental-time-points-DE-grouped
21 Clusters - Grouped stages analysis - MACS - Differentially Enriched (DE) peaks
matteozoia4/OSTERWALDER-LAB---Multiome-snATACseq---Macs3---21Clusters-Developmental-time-points-grouped-analysis
21 Clusters - Grouped stages analysis - MACS3
matteozoia4/OSTERWALDER-LAB---TFBMs-JASPAR-2024---21Clusters-CelltypeSpecificTFs---0.20AvgExpr-0.5Avg.LogFC2
matteozoia4/OSTERWALDER-LAB---TOBIAS-2020---21Clusters---CelltypeSpecificTFBMs
matteozoia4/scriptsForAmandioEtAl2021
All the scripts needed to reproduce the NGS figures in Amandio et al. 2021 from raw data.
matteozoia4/Shox2_Paper_Images
matteozoia4/VanEif_2020_ATACseq_SANLPC_VLCM
ATACseq Sinoatrial_node_like_pacemaker_cells_and_ventricle_like_cells