/BoaretoTomkaIber2018

Positional information encoded in the dynamic differences between neighbouring oscillators during vertebrate segmentation

Primary LanguageJupyter Notebook

Source code of the analysis of the following manuscript:

Positional information encoded in the dynamic differences between neighbouring oscillators during vertebrate segmentation. Marcelo Boareto, Tomas Tomka, and Dagmar Iber. https://www.biorxiv.org/content/early/2018/03/25/286328

Figure 2 https://github.com/mboareto/BoaretoTomkaIber2018/blob/master/codes/SomiteSegmentationModel_invivo.ipynb

Figures 3 and 5 https://github.com/mboareto/BoaretoTomkaIber2018/blob/master/codes/SomiteSegmentationModel_constGrowth.ipynb

Figure 4 https://github.com/mboareto/BoaretoTomkaIber2018/blob/master/codes/SomiteSegmentationModel_dynamicGrowth.ipynb

Figure 6 https://github.com/mboareto/BoaretoTomkaIber2018/blob/master/codes/SomiteSegmentationModel_exvivo.ipynb

The simulations were evaluated in Python and presented as Jupyter notebooks for easy visualisation (http://jupyter.org/).