mcanouil/NACHO

Column `cols` must be length 1 (the number of rows), not 3 while running Summarize

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athulmenon commented

Please briefly describe your problem and what output you expect. If you have a question, please don't use this form. Instead, ask on https://stackoverflow.com/ or https://community.rstudio.com/.

Please include a minimal reproducible example (AKA a reprex). If you've never heard of a reprex before, start by reading https://www.tidyverse.org/help/#reprex.

Hi,

Tried to run NACHO as mentioned in the supplementary file. Data from GEO is downloaded and Samplesheet.csv is also generated. But once I am using Summarize function it shows "Error: Column cols must be length 1 (the number of rows), not 3". The reprex() shows different error.
Thanks in advance.
Athul

nacho <-summarize(data_directory =paste0(getwd(), "/GSE70970"),ssheet_csv =paste0(getwd(), "/GSE70970/Samplesheet.csv"),id_colname = "IDFILE",housekeeping_predict = TRUE, normalisation_method = "GEO",n_comp = 10)
#> Error in summarize(data_directory = paste0(getwd(), "/GSE70970"), ssheet_csv = paste0(getwd(), : could not find function "summarize"
mcanouil commented

Hi,

thanks for using NACHO, please refer to #12

Best regards !
Mickaël

mcanouil commented

Hi,

In response to #12 (comment)
Could you run the reproducible examples provided in a new R session ?