mcmero/SVclone

Issues

• Output file for SV VAF

  #37 opened 4 months ago by poojachandra
  5

• 'snv_results.RData' file not being generated

  #36 opened 5 months ago by poojachandra
  1

• Error while running SV clone using the 'consensus' mode for SNVs

  #35 opened 6 months ago by poojachandra
  7

• Fetching reads fails in annotate step

  #34 opened 6 months ago by kerstinth
  2

• Not collecting all span evidence available

  #31 opened 9 months ago by surajraj99
  6

• VAF adjustment for duplications

  #33 opened 9 months ago by surajraj99
  3

• svclone count --> ValueError: multiple tag sizes BAM file

  #32 opened 10 months ago by handoko12u
  7

• Interruption at cluster step

  #29 opened a year ago by sainadfensi
  4

• CNV input is breaking svclone filter

  #25 opened 2 years ago by anoronh4
  6

• SVclone bioconda installation error

  #28 opened 2 years ago by kim1339
  3

• AttributeError when combining ccube_sv_input files

  #27 opened 2 years ago by mdiaz09
  2

• error in file path for writing post-assign pdf

  #26 opened 2 years ago by anoronh4
  0

• Errors on annotating

  #24 opened 3 years ago by alhafidzhamdan
  1

• FFPE vs Frozen

  #15 opened 4 years ago by mkinnaman
  3

• Example data

  #23 opened 3 years ago by kbredemeyer
  2

• SVclone annotate skipping SV events

  #22 opened 3 years ago by kbredemeyer
  3

• No Configuration File Found

  #21 opened 3 years ago by kbredemeyer
  1

• cluster output snv_results.RData not being generated

  #20 opened 3 years ago by Ignatiocalvin
  5

• CRAM files

  #19 opened 3 years ago by azhark2
  2

• Several questions regarding CCF estimation results

  #18 opened 3 years ago by willhooper
  1

• Determinism

  #17 opened 4 years ago by willhooper
  3

• Warning: record contains invalid attributes, skipping

  #16 opened 4 years ago by Biojenifer
  2

• CCFs > 1

  #14 opened 4 years ago by willhooper
  5

• All SNVs getting filtered

  #13 opened 4 years ago by willhooper
  2

• multiple tag size

  #12 opened 4 years ago by mkinnaman
  2

• VCF input formats

  #11 opened 4 years ago by willhooper
  2

• interpretation of results / clustering with only 1 SV

  #6 opened 5 years ago by Sames-Jtudd
  7

• Pyclone Input

  #10 opened 5 years ago by mkinnaman
  2

• Error in if (trim > 0 && n) { : missing value where TRUE/FALSE needed

  #9 opened 5 years ago by alvinwt
  1

• 0 spanning read counts

  #8 opened 5 years ago by trwo
  2

• count function stalls out

  #7 opened 5 years ago by mkinnaman
  8

• installation//import problem

  #4 opened 5 years ago by EricDeveaud
  1

• Error : No section: 'BamParameters'

  #5 opened 5 years ago by KeyTals
  1

• Docker Version

  #1 opened 6 years ago by xtmgah
  1

• Fetching reads failed

  #3 opened 5 years ago by glnegri
  1

• newer pysam versions break count.py

  #2 opened 5 years ago by wresch
  1