mdozmorov
Bioinformatician, interested in 3D genomics, cancer, statistics, programming, machine and deep learning
Pinned Repositories
Cancer_notes
A continually expanding collection of cancer genomics notes and data
HiC_data
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
HiC_tools
A collection of tools for Hi-C data analysis
Immuno_notes
Immunology-related bioinformatics data and tools
MachineLearning_notes
Machine learning and deep learning resources
scATAC-seq_notes
scATAC-seq data analysis tools and papers
scHiC_notes
Notes on single-cell Hi-C technologies, tools, and data
scRNA-seq_notes
A list of scRNA-seq analysis tools
Statistics_notes
Statistics, data analysis tutorials and learning resources
TCGAsurvival
Scripts to analyze TCGA data
mdozmorov's Repositories
mdozmorov/gwas2bed
Extracting disease-specific genomic coordinates from GWAS catalog
mdozmorov/Aging
Epigenomic enrichment analysis of age-related genomic regions
mdozmorov/presentations
Talks and related material
mdozmorov/MDgenomerunner
MD functions mostly for GenomeRunner project. See MDmisc R package for MD miscellaneous functions
mdozmorov/HMP2
16S rRNA sequencing data for the HMP2 project
mdozmorov/R.genomerunner
Scripts and examples of visualization and analysis of the enrichment and epigenomic similarity results
mdozmorov/dcaf
Misc. scripts and examples
mdozmorov/GTEx
Playground with GTEx data
mdozmorov/Talk_JSM2019
Slides for JSM2019, "SpectralTAD: Defining Hierarchy of Topologically Associated Domains Using Graph Theoretical Clustering"
mdozmorov/enrichCM
enrich cell markers
mdozmorov/GenomicDistributions
Calculate and plot distributions of genomic ranges across the genome
mdozmorov/lecture1
Test repo
mdozmorov/Talk_Genomics
Talk for the Science Club, Department of Pathology, VCU. May 15, 2019.
mdozmorov/Talk_ISMB2020
TADcompare abstract for the virtual ISMB 2020 conference
mdozmorov/academic-kickstart
mdozmorov/assessr
Assessing abstracts for eRum 2020
mdozmorov/bbr
Biostatistics for Biomedical Research
mdozmorov/BioC2020
BioC2020: Where Software and Biology Connect
mdozmorov/BIOS567.2018
Statistical Methods for High-throughput Genomic Data I, https://mdozmorov.github.io/BIOS567.2018/
mdozmorov/CCLE
CCLE exploratory analysis
mdozmorov/docker-rstudio-keras
🐳 RStudio + tidyverse + keras (cpu)
mdozmorov/enrichR
A hacky little interface to call the Enrichr functional enrichment tool from R.
mdozmorov/FastPCA
FastPCA using PRIMME
mdozmorov/MAC_notes
Miscellaneous documents
mdozmorov/mediabuilder
mdozmorov/NCI60
Playground with omics data from NCI-60 cell lines
mdozmorov/neuralart_tensorflow
Implementation of "A Neural Algorithm of Artistic Style" by Tensorflow
mdozmorov/Paper-HMP2
HMP2Data: an R package to access multi-omics data from the integrative Microbiome Project
mdozmorov/presentation_microarray_overview
Introduction to the theory and practice of gene expression analysis, presentation slides
mdozmorov/quoter
An R package for random quotations