metamaden/recountmethylation

R CMD CHECK 1E 2W

metamaden opened this issue · 2 comments

Get Status: 1 ERROR, 2 WARNINGs

Currently using the following shellscript:

#!/usr/bin/env bash
ghpath='/Users/maden/Documents/GitHub/'
libname='recountmethylation'
libpath=$ghpath$libname
# read version from DESCRIPTION
sed '2q;d' $libpath'/DESCRIPTION'
vers=$(sed '2q;d' $libpath'/DESCRIPTION')
vf=${vers:9}
tarpath=$libpath'_0.1.1.tar.gz'
# Do R commands
R CMD BUILD $libpath
R CMD CHECK $tarpath

1 warning left after latest commit.

Updated shellscript:

#!/usr/bin/env bash
ghpath='/Users/maden/Documents/GitHub/'
libname='recountmethylation'
libpath=$ghpath$libname
# read version from DESCRIPTION
sed '2q;d' $libpath'/DESCRIPTION'
vers=$(sed '2q;d' $libpath'/DESCRIPTION')
vf=${vers:9}
tarpath=$libpath'_'$vf'.tar.gz'
# Do R commands
cd Documents/GitHub
R CMD INSTALL $libpath
R CMD BUILD $libpath
R CMD CHECK $tarpath

Returns with Status: OK. Closing this issue