meyer-lab/tfac-mrsa

Make performance plots of the individual data types

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While we're waiting on the factorization model, we could still finalize the ROC plots for using each individual data type:

  • Cytokines with LR
  • Gene expression with LR

I know you included SVM of cytokines in here previously, but I like being consistent with the Rossetti et al manuscript in using a linear model.

Okay. I believe Jackson is including these as part of his analysis, using the raw data types compared with the factored patient by component. Should I instead do this part and/or should he remove them from his analysis? If I do, should I use all features, or some combination?

Hmm... we can wait on this and decide later.