Pinned Repositories
CollectiveMapping
Collective mapping using swarm robots
aws-parallelcluster
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.
fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
gccontent-benchmark
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
githubtesting
hts-nim-sugar
Wrapper code around hts-nim for easy of use
jupyterlab_html
(Merged into JupyterLab Core!) JupyterLab extension for displaying HTML files
PokeVis
split_bed_by_index
Split bed intervals by estimated read counts from bam index
toil_container
:whale: Toil + Docker and Singularity.
mflevine's Repositories
mflevine/jupyterlab_html
(Merged into JupyterLab Core!) JupyterLab extension for displaying HTML files
mflevine/hts-nim-sugar
Wrapper code around hts-nim for easy of use
mflevine/PokeVis
mflevine/aws-parallelcluster
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.
mflevine/fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
mflevine/gccontent-benchmark
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
mflevine/githubtesting
mflevine/hts-nim
nim wrapper for htslib for parsing genomics data files
mflevine/intro2UnixandSGE
resource for unix and SGE beginners
mflevine/mflevine.github.io
mflevine/neat-python
Python implementation of the NEAT neuroevolution algorithm
mflevine/PCAP-core
NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)
mflevine/smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
mflevine/toil_container
:whale: A python package with container support for Toil.
mflevine/webtoolpractice