miRastic

annapurna

AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.

AutoDock-Vina

AutoDock Vina

Biomolecular-Calculations

Calculation of Biomolecular Dimensions for AutoDock VINA Docking and Other Operations

ChimeraX

Source code for molecular graphics program UCSF ChimeraX

CTRC-Basic

Dr. Basu Lab Student Code

FORK-simulation

Python functions for simulating mathematical models, estimating model parameters, quantifying uncertainties and visualizing results.

Forked--avogadrolibs

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

FORKED--forna

Create force-directed graphs of RNA secondary structures.

Forked--InterMol

Conversion tool for molecular simulations

FORKED--jump-api

API for Unsub

miRastic/Forked--InterMol

Conversion tool for molecular simulations

miRastic/FORKED--jump-api

API for Unsub

miRastic/annapurna

AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.

miRastic/AutoDock-Vina

AutoDock Vina

miRastic/Biomolecular-Calculations

Calculation of Biomolecular Dimensions for AutoDock VINA Docking and Other Operations

miRastic/ChimeraX

Source code for molecular graphics program UCSF ChimeraX

miRastic/CTRC-Basic

Dr. Basu Lab Student Code

miRastic/FORK-simulation

Python functions for simulating mathematical models, estimating model parameters, quantifying uncertainties and visualizing results.

miRastic/Forked--avogadrolibs

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

miRastic/FORKED--forna

Create force-directed graphs of RNA secondary structures.

miRastic/Forked--Molecular_Dynamics

NAMD simulation setup for a an example setup of polypeptide

miRastic/GMXvg

Plotting graphs from XVGs generated by GROMACS in Python

miRastic/iDeepS

inferring sequence-structure motifs using deep learning

miRastic/manim

Animation engine for explanatory math videos

miRastic/MDAnalysis-Forked

MDAnalysis is a Python library to analyze molecular dynamics simulations.

miRastic/microcontroller

microcontroller

miRastic/miRastic

Code Contributor

miRastic/Molecular-Dynamics

miRastic/openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

miRastic/pdbfixer

PDBFixer fixes problems in PDB files

miRastic/plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

miRastic/SieveAI-Dev

An automated drug discovery pipeline

miRastic/UtilityLib

Python utility lib for easy file and data handling