The chkMocks is a basic R package for comparing composition of experimental mock samples with thier theoretical composition. Default composition is for Product name D6300.Not tested with custom mocks.
We provide examples for:
ZymoBIOMICS™ Microbial Community Standard. Catalog No. D6300
Fasta files for full-length 16S rRNA gene sequences downloaded from ZymoBiomics
Install
library(devtools) # make sure you have installed devtools
install_github("microsud/chkMocks")
Package documentation can be found at https://microsud.github.io/chkMocks/
Shetty SA. (2022). chkMocks: An R Package to Compare Mock Community Samples in Microbiome Amplicon Sequencing Studies (0.1.03). Zenodo. https://doi.org/10.5281/zenodo.6951522
- Medische Microbiologie en Infectiepreventie, University Medical Center Groningen, The Netherlands
- RIVM, The Netherlands
Contact
Sudarshan A. Shetty [sudarshanshetty9[@]gmail[dot].com]