Pinned Repositories
Data_Science
Training requirements for joining projects
Day_1_Exercise
Lets review commands we have learned today
DNA-Sequencing-Classifier
EANBiT-RT2020
Website for the 2019 iteration of EANBiT Residential Training.
esflu_wg2_phylodynamics
ESFLU WG2 Training School: Zero to Hero Phylogenetics and Phylodynamics
Extract_Genes
A workflow to extract the spike gene sequences from SARS-CoV-2 full genome sequence.
IRMA-Summary
Woprkflow to summarise IRMA assembly output
Kenya-COVID-19-Dashboard
A visualisation of COVID-19 associated dataset in Kenya
kenya-ncov-analysis
SARS-CoV-2 analysis using Nextstrain
ml_sarscov2
Machine Learning Approach for Predicting CoVID-19 Cases and Classifying SARS-CoV-2 Variants
mikemwanga's Repositories
mikemwanga/Extract_Genes
A workflow to extract the spike gene sequences from SARS-CoV-2 full genome sequence.
mikemwanga/Data_Science
Training requirements for joining projects
mikemwanga/IRMA-Summary
Woprkflow to summarise IRMA assembly output
mikemwanga/Kenya-COVID-19-Dashboard
A visualisation of COVID-19 associated dataset in Kenya
mikemwanga/ml_sarscov2
Machine Learning Approach for Predicting CoVID-19 Cases and Classifying SARS-CoV-2 Variants
mikemwanga/Day_1_Exercise
Lets review commands we have learned today
mikemwanga/EANBiT-RT2020
Website for the 2019 iteration of EANBiT Residential Training.
mikemwanga/esflu_wg2_phylodynamics
ESFLU WG2 Training School: Zero to Hero Phylogenetics and Phylodynamics
mikemwanga/Filman
Bioinformatics tool to filter human reads from raw datasets
mikemwanga/Genomics-One-B
Step-by-Step
mikemwanga/kenya-ncov-analysis
SARS-CoV-2 analysis using Nextstrain
mikemwanga/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
mikemwanga/Intro2MachineLearning
mikemwanga/introduction-to-statistics-with-python-training
material for the "Introduction to Statistics with Python" SIB-training course
mikemwanga/Introduction_To_Linux
Basic Introduction_To_Linux
mikemwanga/mikemwanga
Config files for my GitHub profile.
mikemwanga/mini-projects-2020
Mini-projects for the 2020 EANBiT virtual training.
mikemwanga/mini_project_2020
COVID-19 MiniProject
mikemwanga/MSC-Project
Whole genome analysis of RVA G1P[8] strain before and after vaccine introduction in Kenya
mikemwanga/ncov-kenya
SARS-CoV-2 Nexstrain build for Kenya
mikemwanga/Phylogenetic_Assignment
Data and analysis of Phylogenetic data
mikemwanga/Project-3
Interrogating public datasets and paths to results on COVID-19 in East Africa
mikemwanga/Python4Bioinformatics2019
Updated materials for MSc Bioinformatics for Pwani University
mikemwanga/ReadCounts
Tool to generate RNASeq count data
mikemwanga/Sequencing_Reports
Dashboard to review weekly sequencing reports from the lab
mikemwanga/spatial_maps
Creating spatial maps R
mikemwanga/TeamMcCooke_HackBio2021_2
HackBio
mikemwanga/Workflows_and_package_management
Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).
mikemwanga/workshop-ncbi-data-with-python
mikemwanga/zika-tutorial
Data and scripts for Zika virus tutorial