Could you tell the meaning of variable n_drugdrug_rel_types in main.py?

Question

Could you tell the meaning of variable n_drugdrug_rel_types in main.py?

Msan1995 opened this issue 6 years ago · 4 comments

Msan1995 commented 6 years ago

Answer 1 · 2018-11-26T18:58:43.000Z

I think it is the number of polypharmacy side effects (or type of edges in drug-drug network). In the paper, they say there have focused on predicting the 964 polypharmacy side effects that each occurred in at least 500 drug combinations.

Answer 2 · 2018-11-26T19:22:13.000Z

I think so too, wanted to confirm. Thank you for the answer

Answer 3 · 2018-11-26T19:22:54.000Z

Do you know how to run the code with the original dataset?

Answer 4 · 2018-11-26T19:29:41.000Z

No problem!

Not yet. I am working on it. I think we just need to create adjacency matrices for the protein-protein network as well as protein-drug network and create a list of adjacency matrices for each edge type in drug-drug network.