Could you tell the meaning of variable n_drugdrug_rel_types in main.py?
Msan1995 opened this issue · 4 comments
Msan1995 commented
Could you tell the meaning of variable n_drugdrug_rel_types in main.py?
vidarmehr commented
I think it is the number of polypharmacy side effects (or type of edges in drug-drug network). In the paper, they say there have focused on predicting the 964 polypharmacy side effects that each occurred in at least 500 drug combinations.
Msan1995 commented
I think so too, wanted to confirm. Thank you for the answer
Msan1995 commented
Do you know how to run the code with the original dataset?
vidarmehr commented
No problem!
Not yet. I am working on it. I think we just need to create adjacency matrices for the protein-protein network as well as protein-drug network and create a list of adjacency matrices for each edge type in drug-drug network.