mingjutsai

mingjutsai's Stars

• shwhalen/targetfinder

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• lh3/bedtk

  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

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• lh3/seqtk

  Toolkit for processing sequences in FASTA/Q formats

  Language:C1.4k308

• lh3/yak

  Yet another k-mer analyzer

  Language:C1138

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k589

• TheAlgorithms/Python

  All Algorithms implemented in Python

  Language:Python186k44.6k

• shiquan/bamdst

  a lightweight bam file depth statistical tool

  Language:C14749

• cartoonist/kseqpp

  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

  Language:C++458

• odeke-em/drive

  Google Drive client for the commandline

  Language:Go6.7k428

• ga4gh/benchmarking-tools

  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

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• bioinform/neusomatic

  NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

  Language:Python16751

• Tessil/ordered-map

  C++ hash map and hash set which preserve the order of insertion

  Language:C++51366

• haoel/leetcode

  LeetCode Problems' Solutions

  Language:C++17.6k4.9k

• luntergroup/octopus

  Bayesian haplotype-based mutation calling

  Language:C++30238

• google/nucleus

  Python and C++ code for reading and writing genomics data.

  Language:C++780125

• ExaScience/elprep

  elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.

  Language:Go28642

• fritzsedlazeck/SURVIVOR

  Toolset for SV simulation, comparison and filtering

  Language:C++35347

• dnanexus-archive/parliament2

  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

  Language:Python10239

• isocpp/CppCoreGuidelines

  The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++

  Language:CSS42.6k5.4k

• Mooophy/Cpp-Primer

  C++ Primer 5 answers

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• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k332

• PubuduSaneth/cnvScan

  CNV screening and annotation tool

  Language:Python245

• WGLab/InterVar

  A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

  Language:Python18893

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k721

• Ensembl/ensembl

  The Ensembl Core Perl API and SQL schema

  Language:Perl7975

• cjlin1/libsvm

  LIBSVM -- A Library for Support Vector Machines

  Language:Java4.5k1.6k

• NctuICLab/PredCRP

  Predicting the regulatory role of CRP transcription factor in Escherichia coli

  Language:C++21