ml-struct-bio/cryodrgn

module 'cryodrgn.dataset' has no attribute 'load_particles'

finde159 opened this issue · 2 comments

finde159 commented

Hi,

I've recently been using cryoDRGN and was trying to run "cryoDRGN_filtering_template.ipynb", but it raises an error saying "AttributeError: module 'cryodrgn.dataset' has no attribute 'load_particles'" in the 16th box.
I have looked at the codes of dataset.ipynb in cryodrgn module and I couldn't find a function or anything named 'load_particles'.
Other modules and functions seem to be imported appropriately, but the line where it says:
particles = dataset.load_particles(config...)
keeps on raising an error.

Please let me know if there is any solution for this.

Thanks.
Mark.

zhonge commented

Hi Mark, Can you try the latest released version 2.3.0 instead of latest development version? You can install the latest release version with either:

$ pip install cryodrgn

or if you are installing from the source code:

$ git checkout 2.3.0
$ pip install .

Thanks for reporting this issue. We are currently refactoring the data loading, and it looks like we need to update some of the functions in the jupyter notebooks.

michal-g commented

We've now updated the filtering notebook in v3.0.1-b to avoid conflicts with the latest development version.