cryodrgn analyze
lainahall opened this issue · 1 comments
lainahall commented
Describe the bug
An issue within UMAP of cryodrgn Analyze
To Reproduce
cryodrgn analyze
Expected behavior
I can get by this by inputting --skip-umap but otherwise my analyze job stops before creating the jupyter notebook
Additional context
`(INFO) (analyze.py) (16-Jan-24 09:08:12) Running UMAP...
/home/exx/.conda/envs/cryodrgn/lib/python3.10/site-packages/numba/np/ufunc/parallel.py:371: NumbaWarning: The TBB threading layer requires TBB version 2021 update 6 or later i.e., TBB_INTERFACE_VERSION >= 12060. Found TBB_INTERFACE_VERSION = 12050. The TBB threading layer is disabled.
warnings.warn(problem)
(INFO) (analyze.py) (16-Jan-24 09:08:43) Generating plots...
/home/exx/.conda/envs/cryodrgn/lib/python3.10/site-packages/seaborn/_decorators.py:36: FutureWarning: Pass the following variables as keyword args: x, y. From version 0.12, the only valid positional argument will be `data`, and passing other arguments without an explicit keyword will result in an error or misinterpretation.
warnings.warn(
/home/exx/.conda/envs/cryodrgn/lib/python3.10/site-packages/seaborn/_decorators.py:36: FutureWarning: Pass the following variables as keyword args: x, y. From version 0.12, the only valid positional argument will be `data`, and passing other arguments without an explicit keyword will result in an error or misinterpretation.
warnings.warn(
/home/exx/.conda/envs/cryodrgn/lib/python3.10/site-packages/seaborn/_decorators.py:36: FutureWarning: Pass the following variables as keyword args: x, y. From version 0.12, the only valid positional argument will be `data`, and passing other arguments without an explicit keyword will result in an error or misinterpretation.
warnings.warn(
/home/exx/.conda/envs/cryodrgn/lib/python3.10/site-packages/seaborn/_decorators.py:36: FutureWarning: Pass the following variables as keyword args: x, y. From version 0.12, the only valid positional argument will be `data`, and passing other arguments without an explicit keyword will result in an error or misinterpretation.
warnings.warn(
Traceback (most recent call last):
File "/home/exx/.conda/envs/cryodrgn/bin/cryodrgn", line 8, in <module>
sys.exit(main())
File "/home/exx/.conda/envs/cryodrgn/lib/python3.10/site-packages/cryodrgn/__main__.py", line 72, in main
args.func(args)
File "/home/exx/.conda/envs/cryodrgn/lib/python3.10/site-packages/cryodrgn/commands/analyze.py", line 385, in main
analyze_zN(
File "/home/exx/.conda/envs/cryodrgn/lib/python3.10/site-packages/cryodrgn/commands/analyze.py", line 250, in analyze_zN
analysis.scatter_color(
File "/home/exx/.conda/envs/cryodrgn/lib/python3.10/site-packages/cryodrgn/analysis.py", line 337, in scatter_color
cbar.draw_all()
AttributeError: 'Colorbar' object has no attribute 'draw_all'. Did you mean: '_draw_all'?`