mojaveazure/seurat-disk

Issues

• error:not a sparse matrix when converting h5ad to Seurat

  #176 opened 7 months ago by gmcregis
  1

• Problem with LoadH5Seurat

  #141 opened 2 years ago by ydai3
  17

• seurat-disk installation in r

  #179 opened 6 months ago by yulchen810
  1

• How do i download a older version of SeuratDisk

  #155 opened a year ago by tushar-dhyani-elucidata
  3

• a perplexing error while converting H5AD to a Seurat object.

  #182 opened 3 months ago by TATABOX99
  1

• Converting the data from Seurat to Anndata

  #184 opened 3 months ago by TakuroIwami
  0

• Possible solution for converting categorical variable (factor) to proper text categoricals in H5AD

  #183 opened 3 months ago by mvfki
  1

• cell type annotation in metadata disappear

  #138 opened 2 years ago by joe-jhou2
  3

• Error in adding RNA assay

  #178 opened 6 months ago by eblchen
  1

• Error in SaveH5Seurat() : HDF5-API Errors

  #168 opened a year ago by ys910111
  1

• error #000: ../../../src/H5D.c in H5Dvlen_reclaim(): line 732: invalid argument

  #181 opened 5 months ago by mayanbriller
  0

• Error for LoadH5Seurat: Too many values for levels provided

  #171 opened 9 months ago by Biolz
  2

• Creating a H5Seurat object error

  #172 opened 9 months ago by CeciPR
  7

• Issues converting Anndata to h5seurat object

  #139 opened 2 years ago by sarakn97
  1

• Error when converting h5Seurat to h5ad

  #162 opened a year ago by zoan128
  11

• Efficiently import gene expression values for a selected gene.

  #180 opened 6 months ago by le-raman
  0

• saves only the variable features

  #177 opened 7 months ago by SofyaMa
  1

• Error in saveh5seurat after upgrading to Seurat v5

  #147 opened a year ago by KristinAass
  16

• Error: 'H5ADToH5Seurat' is not an exported object from 'namespace:SeuratDisk'

  #175 opened 7 months ago by Flu09
  0

• Error in source[["var"]][[mf]]$read() : attempt to apply non-function

  #136 opened 2 years ago by scauzhaos
  7

• trouble converting SeuratObject to h5ad

  #174 opened 7 months ago by ncedi12
  1

• Seurat Object not closing when using SaveH5Seurat

  #164 opened a year ago by pshukla63
  1

• LoadH5Seurat no longer working for me

  #156 opened 8 months ago by ccnawrocki
  7

• Error: Unknown file type: h5seurat

  #166 opened a year ago by aodainic7
  6

• Problem with loading a h5seurat file with LoadH5Seurat

  #173 opened 8 months ago by k4terina
  0

• Error: "Failed to install 'unknown package' from GitHub: Timeout was reached" while installing SeuratDisk, R version 4.1.1, Platform: x86_64-w64-mingw32/x64 (64-bit)

  #159 opened a year ago by aanu28
  2

• Error while saving the h5seurat file from the Seurat object

  #169 opened 10 months ago by venkan
  6

• HDF5-API Errors: error #000: H5Ocopy.c in H5Ocopy(): line 240: unable to copy object

  #149 opened a year ago by catsargent
  1

• Export to h5ad from BPCells based Seurat object

  #170 opened 10 months ago by royfrancis
  0

• Error when saving Seurat to H5Seurat file with latest Seurat Version

  #154 opened a year ago by ShanshanHe-44
  4

• Error when saving a Visium Seurat to H5Seurat

  #152 opened a year ago by BenjaminDEMAILLE
  2

• SeuratDisk install

  #165 opened a year ago by SaharBJ
  0

• Scaling after conversion from anndata to seurat object

  #163 opened a year ago by pmarzano97
  0

• Error in converting h5ad to h5Seurat Error: (converted from warning) Unknown file type: h5ad

  #157 opened a year ago by Sophia409
  1

• Only a subset of scaled data available in .X

  #161 opened a year ago by tessadgreen
  0

• Converting .rds (spatial transcriptomics) to anndata.

  #144 opened 2 years ago by bogdan-bios
  1

• Matrix type mismatch when using LoadH5Seurat()

  #150 opened a year ago by hlmtran
  1

• Export all reductions in h5ad

  #160 opened a year ago by bellenger-l
  0

• error in curl::curl_download() step:Failed to open file pbmc3k_final.h5ad.curltmp.

  #158 opened a year ago by Sophia409
  0

• Error in if (!all(cur_arg > 0)) { : missing value where TRUE/FALSE needed

  #134 opened 2 years ago by denvercal1234GitHub
  6

• Error Loading Visium H5Seurat

  #153 opened a year ago by BenjaminDEMAILLE
  0

• Error: Attempting to add a different number of cells and/or features

  #151 opened a year ago by sarahbonnin
  0

• error Convert("test.h5seurat", dest = "h5ad", overwrite = TRUE)

  #148 opened a year ago by wang0430
  0

• Error in self$exists(name) : HDF5-API Errors:

  #146 opened a year ago by imerelli
  0

• Incompatability with latest version of anndata

  #145 opened 2 years ago by LinearParadox
  0

• Another issue with h5ad -> h5seurat

  #143 opened 2 years ago by bennjmo
  1

• AnnData to h5seurat not working via rpy2/jupyter notebook

  #142 opened 2 years ago by jesswhitts
  0

• Merging two .h5seurat files containing ATAC assays renders them unsaveable using SaveH5Seurat

  #140 opened 2 years ago by volkansevim
  0

• Converting from .h5Seurat to h5ad messes up observational metadata

  #137 opened 2 years ago by pakiessling
  1

• RStudio Crashes with LoadH5Seurat()

  #135 opened 2 years ago by sarakn97
  1