molgenis/capice-resources

Issues

• [compare-model-performance] Model 1 and model 2 violinplot can be flipped

  #78 opened a year ago by SietsmaRJ
  0

• [compare-model-performance] Violinplot x axis labels seem flipped

  #72 opened a year ago by SietsmaRJ
  0

• Matplotlib fails to install

  #69 opened a year ago by SietsmaRJ
  1

• New ClinVar release (20230430) is not supported (error thrown)

  #68 opened 2 years ago by svandenhoek
  0

• [compare-model-performance] Supplying score file of different size than label file raises masking error

  #65 opened 2 years ago by SietsmaRJ
  0

• compare-model-performance crashes on violinplot when empty dataframe is supplied

  #56 opened 2 years ago by SietsmaRJ
  0

• Raise error instead of warning "unknown review status ClinVar"

  #58 opened 2 years ago by SietsmaRJ
  0

• Train-data-creator doesn't use SYMBOL ID's

  #55 opened 2 years ago by SietsmaRJ
  0

• Train-data-creator doesn't take multiple SYMBOL (ID's) into account

  #54 opened 2 years ago by SietsmaRJ
  0

• Security vulnerabilities

  #42 opened 2 years ago by SietsmaRJ
  0

• Train CAPICE models using SpliceAI masked instead of raw data

  #6 opened 2 years ago by dennishendriksen
  1

• AUC.png shows incorrect number of samples

  #23 opened 2 years ago by SietsmaRJ
  0

• `utility_scripts/process_vep_tsv.py`: When purely giving output filename, an error is thrown instead of file being written in current directory.

  #25 opened 2 years ago by svandenhoek
  0

• liftover_variants.sh not removing index file

  #27 opened 2 years ago by svandenhoek
  0

• Pip won't build on master!

  #20 opened 2 years ago by svandenhoek
  3

• Comparison scripts not functioning out-of-the-box

  #14 opened 2 years ago by svandenhoek
  1

• train_data_creator: Add conflict handling if sources disagree about pathogenicity classification.

  #9 opened 2 years ago by svandenhoek
  0

• GeneSymbols with `_` causes invalid formatted ID field.

  #11 opened 2 years ago by svandenhoek
  2

• When running train_data_creator I get error

  #15 opened 2 years ago by marikaris
  1

• train_data_creator: Better handling of duplicates.

  #10 opened 2 years ago by svandenhoek
  0

• Testing for Windows fail

  #4 opened 3 years ago by SietsmaRJ
  0