Pinned Repositories
capice
cluster-utils
Collection of utilities / helper scripts to make life easier on our HPC clusters.
molgenis
MOLGENIS - for scientific data: management, exploration, integration and analysis.
molgenis-emx2
MOLGENIS EMX2, the latest version of the MOLGENIS data platform.
molgenis-legacy
The MOLGENIS Software generator tool for creating Dynamic Software Infrastructure used in the Life Sciences
molgenis-pipelines
Pipelines for NGS, imputation, gwas, ...
molgenis-service-armadillo
Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite
NIPTeR
R Package for Non Invasive Prenatal Testing (NIPT) analysis
systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
vip
Variant Interpretation Pipeline
MOLGENIS - open source solutions for scientific data's Repositories
molgenis/NIPTeR
R Package for Non Invasive Prenatal Testing (NIPT) analysis
molgenis/molgenis-pipelines
Pipelines for NGS, imputation, gwas, ...
molgenis/CoNVaDING
Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage next-generation sequencing (NGS) data
molgenis/gavin
Gene specific calibrations for CADD scores based on ClinVar, ExAC and SnpEff
molgenis/ontocat
OntoCat - Ontology Common API Tasks
molgenis/molgenis-app-autobetes
molgenis-autobetes server
molgenis/molgenis-tools-cmd-annotators
runnable jar to run the molgenis annotators
molgenis/molgenis-ui-filter
Filter components
molgenis/VaSeBuilder
Validation Set Builder
molgenis/analysis-metrics-prediction-display
Prediction of quality metrics to annotate low quality results
molgenis/ansible
Ansible playbook for MOLGENIS
molgenis/datamodels
molgenis/ds-upload
Upload tools for DataSHIELD backends
molgenis/gwas-subset
molgenis/HMF_pipeline
molgenis/minio.s3
An R package to access MinIO storage and querying.
molgenis/molgenis-app-ase
Allelic Expression Molgenis App
molgenis/molgenis-app-bbmri-nl
molgenis/molgenis-bioschemas
A repository for holding bioschema files
molgenis/molgenis-cafe
Hackathon result: let MOLGENIS be queried by Cafe Variome
molgenis/molgenis-catalogue
molgenis/molgenis-r-mosaic
R package for mosaic calculation
molgenis/molgenis-ui-footer
Footer component of MOLGENIS
molgenis/molgenis.github.io
molgenis/mvl-vcf-converter
Converts Managed Variant Lists to VCF (Variant Call Format) files
molgenis/NGS_Microbiome
molgenis/NGS_ScRNA
molgenis/TIMID
Refreshing data TIMID project
molgenis/vibe-suppl
Variant Interpretation using Biological Evidence - supplemental files
molgenis/vkgl-vcf-converter
Converts http://molgenis.org/vkgl downloads to VCF (Variant Call Format) files