molpopgen/libsequence

Deprecation list

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molpopgen commented

Mark as deprecated or remove stuff that can be removed b/c there are better tools:

  • Sequence/Correlations.hpp -- GSL better for this.
  • Coalescent simulation machinery. -- msprime, discoal, etc.
  • Sequence/FastaExplicit.hpp, src/FastaExplicit.cc -- not as much need for this kind of thing, IMO
  • Sequence/variantCounts.hpp -- This was never used, and is based on deprecated SimData
  • Sequence/SummStats/classic.hpp -- This was never used, and is based on deprecated SimData
  • Sequence/Crit.hpp and related examples. -- Stat packages do this better, as does GSL.