mozack/abra

Is it possible to get the assembled contig?

juberpatel opened this issue · 2 comments

juberpatel commented

Is it possible to get as output the assembled contig against which the realignment is done for each targeted region?

mozack commented

The raw assembled contigs will appear under the "--working" dir in all_contigs.fasta

mozack commented

For ABRA2 , assembled contigs can be output using the --contigs option. Contigs generate via methods other than assembly are not currently output.