mr-c
@common-workflow-language co-founder & CWL Project Lead. Debian Developer volunteer for the Debian-Med (bioinformatics) team. #SciWorkflows #FreeOpenStandards
@common-workflow-language Berlin, Germany
Pinned Repositories
common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
cwlprov
Profile for provenance research object of a CWL workflow run
cwltool
Common Workflow Language reference implementation
schema_salad
Semantic Annotations for Linked Avro Data
bioapi-linux
This is the reference implementation of BioAPI 1.1 for Linux. Note for bioinformaticians: hilariously I used to work in biometrics. This will be of no use to you and is essentially unmaintained. Cheers!
common-workflow-language
Repository for CWL Specfications
CWL-Quick-Start
Short demo of a cwl workflow
hive-cwl-examples
misc
shouldacite
Should you cite this software?
mr-c's Repositories
mr-c/2012-paper-diginorm
Paper source, analysis notebook, and data generation/analysis scripts for diginorm paper
mr-c/2013-khmer-counting
mr-c/2013-paper-ssspe
4 pager for http://wssspe.researchcomputing.org.uk/
mr-c/2014-paper-wssspe14
mr-c/convert_md_2_rst
A simple Sphinx Doc extension to convert Markdown files to ReStrucTured documents
mr-c/Galaxy-XSD
Galaxy XML tool wrapper XSD
mr-c/gxargparse
drop in replacement for argparse with Galaxy XML generation on the side
mr-c/khmer-citation
The paper that is the citation handle for khmer software.
mr-c/khmer-protocols
mr-c/literate-resting
Scripts and code for development of literate testing with reST-based shell tutorials.
mr-c/pam-bioapi
Automatically exported from code.google.com/p/pam-bioapi
mr-c/sga
de novo sequence assembler using string graphs
mr-c/tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
mr-c/workflows
Community maintained workflows & tools (with examples)