mr-c

common-workflow-language

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

cwlprov

Profile for provenance research object of a CWL workflow run

cwltool

Common Workflow Language reference implementation

schema_salad

Semantic Annotations for Linked Avro Data

bioapi-linux

This is the reference implementation of BioAPI 1.1 for Linux. Note for bioinformaticians: hilariously I used to work in biometrics. This will be of no use to you and is essentially unmaintained. Cheers!

common-workflow-language

Repository for CWL Specfications

CWL-Quick-Start

Short demo of a cwl workflow

hive-cwl-examples

misc

shouldacite

Should you cite this software?

mr-c/smart_open

Utils for streaming large files (S3, HDFS, gzip, bz2...)

mr-c/Boxedwine

mr-c/bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

mr-c/cwlScala

mr-c/dockstore-tool-md5sum

A very simple tool that just performs an md5sum

mr-c/DropletUtils

Clone of the Bioconductor repository for the DropletUtils package.

mr-c/emscripten

Emscripten: An LLVM-to-WebAssembly Compiler

mr-c/freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

mr-c/galaxy

Data intensive biology for everyone.

mr-c/hmmlearn

Hidden Markov Models in Python, with scikit-learn like API

mr-c/invesalius3

3D medical imaging reconstruction software

mr-c/macsyfinder

MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.

mr-c/maffilter

The MafFilter genome alignment processor

mr-c/mypy-dev

mr-c/needletail

Fast FASTX parsing and k-mer methods in Rust

mr-c/nfdi4plants.knowledgebase

This is the source repo for the nfdi4plants knowledge base webpage.

mr-c/piz-rs

Parallelized zip archive reading

mr-c/PyCorrFit

data analysis and fitting software for fluorescence correlation spectroscopy (FCS)

mr-c/roots

Library of well known algorithms for numerical root finding.

mr-c/scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

mr-c/scran

Clone of the Bioconductor repository for the scran package.

mr-c/signposting-chrome-extension

Chrome browser extensions to report the existence of signposting.org links in HTTP/HTML headers

mr-c/stk-code

The code base of supertuxkart

mr-c/surge

Synthesizer plug-in (previously released as Vember Audio Surge)

mr-c/types-psutil-feedstock

A conda-smithy repository for types-psutil.

mr-c/vec-collections

A set of collection data types for rust that are simple wrappers around vectors

mr-c/vsearch

Versatile open-source tool for microbiome analysis

mr-c/wabt

The WebAssembly Binary Toolkit

mr-c/workflow-execution-schemas

mr-c/workflow-run-crate-paper