mr-c
@common-workflow-language co-founder & CWL Project Lead. Debian Developer volunteer for the Debian-Med (bioinformatics) team. #SciWorkflows #FreeOpenStandards
@common-workflow-language Berlin, Germany
Pinned Repositories
common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
cwlprov
Profile for provenance research object of a CWL workflow run
cwltool
Common Workflow Language reference implementation
schema_salad
Semantic Annotations for Linked Avro Data
bioapi-linux
This is the reference implementation of BioAPI 1.1 for Linux. Note for bioinformaticians: hilariously I used to work in biometrics. This will be of no use to you and is essentially unmaintained. Cheers!
common-workflow-language
Repository for CWL Specfications
CWL-Quick-Start
Short demo of a cwl workflow
hive-cwl-examples
misc
shouldacite
Should you cite this software?
mr-c's Repositories
mr-c/atlarge-phd-thesis-template
A LaTeX template for creating beautiful PhD theses, originally created by TU Delft.
mr-c/bdbag
Big Data Bag Utilities
mr-c/docs.reana.io
REANA documentation web site
mr-c/lxml-stubs
Type stubs for the lxml package
mr-c/mistune
A fast yet powerful Python Markdown parser with renderers and plugins.
mr-c/mypy_primer
Run mypy over millions of lines of code
mr-c/openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
mr-c/parasail
Pairwise Sequence Alignment Library
mr-c/pytest-reana
REANA pytest fixtures and test utilities
mr-c/reana
REANA: Reusable research data analysis platform
mr-c/reana-auth-krb5
REANA Kerberos authenticator
mr-c/reana-auth-rucio
REANA authentication sidecar for Rucio
mr-c/reana-auth-vomsproxy
REANA VOMS proxy authenticator
mr-c/reana-client
REANA command-line client
mr-c/reana-client-go
REANA command-line client in Go
mr-c/reana-commons
REANA common utilities and schemas
mr-c/reana-db
REANA database utilities
mr-c/reana-env-aliphysics
REANA Environment AliPhysics
mr-c/reana-env-jupyter
REANA Environment Jupyter
mr-c/reana-github-actions
REANA GitHub Actions
mr-c/reana-job-controller
REANA Job Controller
mr-c/reana-message-broker
REANA Message Broker
mr-c/reana-server
REANA API server
mr-c/reana-ui
REANA UI frontend
mr-c/reana-workflow-controller
REANA Workflow Controller
mr-c/reana-workflow-engine-cwl
REANA Workflow Engine CWL
mr-c/reana-workflow-engine-serial
REANA Workflow Engine Serial
mr-c/reana-workflow-engine-snakemake
REANA Workflow Engine Snakemake
mr-c/reana-workflow-engine-yadage
REANA Workflow Engine Yadage
mr-c/www.reana.io
REANA project web site