msettles

msettles's Stars

• yhat/rodeo

  A data science IDE for Python

  Language:JavaScript3.9k197518410

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.1k24823973

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k737.9k906

• miloyip/nativejson-benchmark

  C/C++ JSON parser/generator benchmark

  Language:JavaScript2k9265261

• ncbi/sra-tools

  SRA Tools

  Language:C1.1k56852242

• broadinstitute/pilon

  Pilon is an automated genome assembly improvement and variant detection tool

  Language:Scala3403017060

• VGP/vgp-assembly

  VGP repository for the genome assembly working group

  Language:Shell185252351

• zeeev/wham

  Structural variant detection and association testing

  Language:C++101194725

• fls-bioinformatics-core/genomics

  Scripts, utilities and programs for genomic bioinformatics.

  Language:Python81185337

• lh3/fermi

  A WGS de novo assembler based on the FMD-index for large genomes

  Language:C75141216

• s4hts/HTStream

  A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

  Language:C++4981339

• dstreett/FLASH2

  Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for amplicons

  Language:C4761312

• ibest/ARC

  Assembly by Reduced Complexity (ARC)

  Language:Python4114575

• dstreett/Super-Deduper

  An application to remove PCR duplicates from high throughput sequencing runs.

  114

• phasegenomics/polar_star

  long-read depth breaking

  Language:Python11360

• msettles/dbcAmplicons

  Analysis of Double Barcoded Illumina Amplicon Data

  Language:Python911327

• jmarshall/cansam

  C++ binding for SAM/BAM files

  Language:C++7421

• amschaal/bioshare

  Language:JavaScript63712

• amschaal/glims

  Language:Python33750

• msettles/idahoWebSite

  My University of Idaho Web Site

  Language:HTML3300

• msettles/rSFFreader

  R packages for flow gram based sequence data Roche 454 and Ion Torrent

  Language:C3402

• ibest/APER

  Analyzing Positional Error in Reads

  Language:Shell11000

• msettles/MicrobialAmplicon

  MicrobialAmplicon Analysis in R

  Language:R1201