muccg/rdrf

runtime error when loading visualisation base data config for Lung cancer

Closed this issue · 2 comments

id2359 commented

Locally,

Deleted everything as a fresh start
Imported staging Lung cancer
Added one test patient.
In shell,
issued
django-admin generate_visualisation_dataframe

23-04-05 15:51:14.564934 visualisation base data config: generating json data for ICHOMLC
[INFO:2023-04-05 15:51:14,565:data.py:83:init] forcing reload of dataframe..
[INFO:2023-04-05 15:51:14,572:data.py:97:init] time taken to load/generate df = 0.007025 seconds
Traceback (most recent call last):
File "/env/bin/django-admin", line 8, in
sys.exit(execute_from_command_line())
File "/env/lib/python3.8/site-packages/django/core/management/init.py", line 419, in execute_from_command_line
utility.execute()
File "/env/lib/python3.8/site-packages/django/core/management/init.py", line 413, in execute
self.fetch_command(subcommand).run_from_argv(self.argv)
File "/env/lib/python3.8/site-packages/django/core/management/base.py", line 354, in run_from_argv
self.execute(*args, **cmd_options)
File "/env/lib/python3.8/site-packages/django/core/management/base.py", line 398, in execute
output = self.handle(*args, **options)
File "/app/rdrf/rdrf/management/commands/generate_visualisation_dataframe.py", line 18, in handle
json_data = rdf.data.to_json()
AttributeError: 'NoneType' object has no attribute 'to_json'

id2359 commented

This is caused because no data exists in the clinical data records yet

id2359 commented

printed message if this fails.
Data needs to be entered into the data records to create a valid dataframe