Pinned Repositories
a2wsgi
Convert WSGI app to ASGI app or ASGI app to WSGI app.
ansible
Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy. Avoid writing scripts or custom code to deploy and update your applications— automate in a language that approaches plain English, using SSH, with no agents to install on remote systems.
ansible-galaxy-extras
Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
usegalaxy-tests
Run tests against usegalaxy.org
workflow2executable
Turn Galaxy Workflows into standalone scripts.
mvdbeek's Repositories
mvdbeek/BioHackathon-projects-2019
This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage projects, publish materials, create code, etc.
mvdbeek/dagobah-training
Galaxy admin trainings for aspiring Skywalkers
mvdbeek/actions-publish-docker
This GitHub action allows you to create and publish Docker images into a Docker registry.
mvdbeek/ansible-influxdb
Ansible Galaxy InfluxDB Role
mvdbeek/bedtools2
A powerful toolset for genome arithmetic.
mvdbeek/bioblend-tutorial
mvdbeek/chromatin_states
mvdbeek/co-op
mvdbeek/cookiecutter-pypackage
Cookiecutter template for a Python package.
mvdbeek/docker-jupyter-notebook
:whale: :microscope: :books: Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy
mvdbeek/docker-rstudio-notebook
RStudio as a Galaxy Interactive Environment
mvdbeek/fiona-feedstock
A conda-smithy repository for fiona.
mvdbeek/galaxy-client-cache
mvdbeek/galaxy-workflow-dockstore-example-1
mvdbeek/graphviz-feedstock
A conda-smithy repository for graphviz.
mvdbeek/isa-rwval
Read/write/validation packages for the ISA tools API
mvdbeek/iuc-tool-test-results
mvdbeek/minikube-setup-action
Installs minikube in your Github Actions workflow.
mvdbeek/nosehtml
HTML Output plugin for Nose / Nosetests
mvdbeek/planemo-action
For github actions
mvdbeek/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
mvdbeek/pysam-compare-reads
cythonized function to compare reads by name
mvdbeek/pysradb
Package for fetching metadata and downloading data from SRA
mvdbeek/pytest-xdist
pytest plugin for distributed testing and loop-on-failures testing modes.
mvdbeek/sequence_utils
Galaxy's sequence utilities are a set of Python modules for reading, analyzing, and converting sequence formats.
mvdbeek/toolshed-test-data
mvdbeek/twill
A simple command-line Web browser, for testing and Web automation.
mvdbeek/twill3
Twill refactor for Python3
mvdbeek/usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
mvdbeek/vscode-python
Python extension for Visual Studio Code