New required Terms for microbeMASST data submission

[giorgialab]

Could you add this lexicon please?

NCBI taxonomy:
B. adolescentis E194a | 367928
B. animalis subsp. lactis UR1 | 555970
B. animalis subsp. animalis R101-8 | 703613
B. bifidum Ti | 500634
B. breve S1 | 518634
B. dentium B764 | 1150423
B. longum subsp. longum E194b | 216816
B. longum subsp. longum 105-A | 1679
B. longum subsp. infantis S12 | 391904
B. pseudologum subsp. pseudolongum PNC-2-9G |1437595
B. scardovii CCUG 13008 A | 1150461
B. catenulatum B669 | 566552
B. pseudocatenulatum B1279 | 547043

Sample collection: in vitro fermentation, liquid
Sample extraction: Acetonitrile 3:1 water
Internal standards: L-phenylalanine-d5, L-tyrosine-d4, L-tryptophan-d5 and indoleacetic acid-d2
Mass spectrometer: Synapt G2

Thanks,

Giorgia

[alan-jarmusch]

to facilitate update can you please update with the NCBI number | Name formatted like this (27334|Penicillium expansum)

[giorgialab]

Here it is!!

(367928|B. adolescentis E194a)
(555970|B. animalis subsp. lactis UR1)
(703613|B. animalis subsp. animalis R101-8)
(500634|B. bifidum Ti)
(518634|B. breve S1)
(1150423|B. dentium B764)
(216816|B. longum subsp. longum E194b)
(1679|B. longum subsp. longum 105-A)
(391904|B. longum subsp. infantis S12)
(1437595|B. pseudologum subsp. pseudolongum PNC-2-9G)
(1150461|B. scardovii CCUG 13008 A)
(566552|B. catenulatum B669)
(547043|B. pseudocatenulatum B1279)

Thanks,

Giorgia