nadiahpk
Models for ecology, evolution, and cooperation. Code or it didn't happen.
National University of Singapore
Pinned Repositories
AMSI-2023
Some tutorial for the AMSI Winter School 2023
carryover-local-adaptation
An individual-based simulation model for local adaptation in a heterogeneous landscape with carryover effects
cell_neighbours_isea3h_vince
homophilic-threshold-PGG
Code to accompany a study of the evolutionary dynamics of cooperation in a public goods game with homophily
inferring-undiscovered-species-extinctions
Singapore plants database and code for inferring the total number of species that went extinct, including species that went extinct before they were discovered.
MODGEE-dark-extinctions-estimator
MODGEE statistical model to estimate species extinctions from museum records including species that went extinct before they could be recorded.
phenology-two-trait-migratory-bird
Octave code for an eco-evolutionary model describing the response of a migratory bird's arrival time and prelaying period to climate change.
qualitative-modelling
Python code for qualitative modelling
settlement-time-game
Octave code to solve for the evolutionarily singular settling time strategy for a nesting bird (e.g. ovenbird) to avoid a nest predator (e.g. chipmunks)
seux
R package for inferring the total number of species that went extinct, including species that went extinct before they could be discovered.
nadiahpk's Repositories
nadiahpk/cell_neighbours_isea3h_vince
nadiahpk/MODGEE-dark-extinctions-estimator
MODGEE statistical model to estimate species extinctions from museum records including species that went extinct before they could be recorded.
nadiahpk/inferring-undiscovered-species-extinctions
Singapore plants database and code for inferring the total number of species that went extinct, including species that went extinct before they were discovered.
nadiahpk/AMSI-2023
Some tutorial for the AMSI Winter School 2023
nadiahpk/homophilic-threshold-PGG
Code to accompany a study of the evolutionary dynamics of cooperation in a public goods game with homophily
nadiahpk/qualitative-modelling
Python code for qualitative modelling
nadiahpk/settlement-time-game
Octave code to solve for the evolutionarily singular settling time strategy for a nesting bird (e.g. ovenbird) to avoid a nest predator (e.g. chipmunks)
nadiahpk/seux
R package for inferring the total number of species that went extinct, including species that went extinct before they could be discovered.
nadiahpk/amsi-dilemma-tournament
A prisoner's dilemma evolutionary tournament, a la Axelrod, for the AMSI Winter School 2023.
nadiahpk/carryover-local-adaptation
An individual-based simulation model for local adaptation in a heterogeneous landscape with carryover effects
nadiahpk/homophilic-many-strategy-PGG
Code to accompany a study of the evolutionary dynamics of many strategies in a public goods game with genetic homophily
nadiahpk/hulthen-2022-playground
Plot data from Hulthen et al (2022; J Anim Ecol)
nadiahpk/antarctic-treaty-system-investigation
Explore Working Papers and Measures / Recommendations in ATS
nadiahpk/jupyter_sandbox
nadiahpk/kawecki-2017-fugitive-coexistence
Python scripts to simulate the invasion of adaptive versus plastic species corresponding to Fig 1 of Kawecki (2017; Ann. Zool. Fennici)
nadiahpk/leviathan
A toy model that allows exploring every strategy and punishment rule in PGG using Boolean algebra
nadiahpk/nadiahpk.github.io
nadiahpk/niche-neutral-riau-birds
Using a niche-neutral model as a baseline to compare nestedness and species segregation patterns for birds in the Riau archipelago, Indonesia
nadiahpk/nlp-playground
Experiments using Claude API
nadiahpk/Parker-et-al-2013
New solutions for Parker et al. (2013)'s model on male resource allocation to pre- versus post-copulatory effort
nadiahpk/phenology-discrete-flocking-paridae
Octave code to find the evolutionarily singular breeding-time strategy for a strict, discrete-flocking resident bird species (e.g. marsh tit) in a phenologically heterogenous landscape.
nadiahpk/phenology-stochastic
Octave code for an eco-evolutionary model determining a migratory bird's breeding date in a stochastically varying environment.
nadiahpk/playground-for-great-good
Mucking around with Haskell
nadiahpk/playground-for-r
Tutes etc. for R
nadiahpk/predation-arrival-time
Octave code to find the invasion fitness of migratory birds subject to predation arriving one day earlier or later than the prevailing arrival-day strategy.
nadiahpk/pyeda
Python EDA
nadiahpk/replacement-clutches
A Jupyter notebook exploring the effect of replacement clutches on recruitment
nadiahpk/sumatran-dispersal-dimorphism
An eco-evolutionary model to explore the possibility that a population dispersing between a large island and several small unstable islands may split into a high- and low-dispersal morph
nadiahpk/tutic-2021-playground
Replicate Tutic (2021; J Math Sociol) and play with the model
nadiahpk/vasconcelos-2014-playground
Replicate Vasconcelos et al. (2014; PNAS) and play with the model