nagshivank
Graduate Student @ Georgia Institute of Technology || Data Science Co-op @ Acrivon Therapeutics
Acrivon TherapeuticsAtlanta, GA
Pinned Repositories
Genotyping-Genome-Assembly
A project that performs genome assembly, quality assessment, and genotyping on paired-end read data. It utilizes the SKESA assembler for genome assembly, QUAST for quality assessment, and MLST for genotyping.
in-silico-PCR
MagnumOpus is a Python package designed to perform in-silico PCR (Polymerase Chain Reaction) on DNA sequences and align the resulting amplicons using the Needleman-Wunsch algorithm. This tool is useful for comparing genetic sequences and identifying similarities and differences between them.
KritikalProject
An open-source coding assistant in Python that leverages a fine-tuned BERT model to recommend code components based on user search queries, providing an alternative to paid software like GitHub Copilot.
Life-Satisfaction-Predictors
Analysis of the 2022 National Health Interview Survey data to identify the strongest predictors of life satisfaction in adults.
Microbial-Genomic-Analysis
A comprehensive microbial genomic analysis pipeline that includes quality control, gene prediction, annotation, and comparative genomic analysis for identifying and visualizing key genetic features in microbial genomes.
Protein-Thermostability-Prediction
A Machine Learning framework to estimate Protein Thermostability from Amino Acid sequences which uses Prot-BERT and Amino Acid Composition Feature Engineering to encode the sequences, and XGBoost and SVR for the regression model.
Sequence-Assembly-Workflow
A Nextflow workflow which trims FASTA sequences and assembles them.
nagshivank's Repositories
nagshivank/Genotyping-Genome-Assembly
A project that performs genome assembly, quality assessment, and genotyping on paired-end read data. It utilizes the SKESA assembler for genome assembly, QUAST for quality assessment, and MLST for genotyping.
nagshivank/in-silico-PCR
MagnumOpus is a Python package designed to perform in-silico PCR (Polymerase Chain Reaction) on DNA sequences and align the resulting amplicons using the Needleman-Wunsch algorithm. This tool is useful for comparing genetic sequences and identifying similarities and differences between them.
nagshivank/KritikalProject
An open-source coding assistant in Python that leverages a fine-tuned BERT model to recommend code components based on user search queries, providing an alternative to paid software like GitHub Copilot.
nagshivank/Life-Satisfaction-Predictors
Analysis of the 2022 National Health Interview Survey data to identify the strongest predictors of life satisfaction in adults.
nagshivank/Microbial-Genomic-Analysis
A comprehensive microbial genomic analysis pipeline that includes quality control, gene prediction, annotation, and comparative genomic analysis for identifying and visualizing key genetic features in microbial genomes.
nagshivank/Protein-Thermostability-Prediction
A Machine Learning framework to estimate Protein Thermostability from Amino Acid sequences which uses Prot-BERT and Amino Acid Composition Feature Engineering to encode the sequences, and XGBoost and SVR for the regression model.
nagshivank/Sequence-Assembly-Workflow
A Nextflow workflow which trims FASTA sequences and assembles them.