Execution with conda

[SuseAgu]

Hi guys! I don't have the option to use your pipeline with docker so, I create a env in conda and I installed canu, samtools,BWA, cmake, racon, miniasm, minimap2 and pilon, but I don't know how to run the pipeline. I changed the options in config.mk (nanopore_reads, illumina_reads, canu_genome_size and PILON_MAX_MEM), but I don't know what its the next step to run the pipeline.

Thanks!!