naobservatory/mgs-workflow

Add profiles for different run settings

willbradshaw opened this issue · 2 comments

willbradshaw commented

Nextflow pipelines can have profiles that modify many settings at once. This would be useful for e.g. running the pipeline locally on EC2 vs using an S3 workdir vs running on Batch.

willbradshaw commented

Implemented in dev branch.

willbradshaw commented

(Still need to update documentation to reflect this.)